G136873


Basic Information

Item Value
gene id G136873
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18473233 ~ 18474916 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172078
ATCGGCCCCTTCTTACCTTCCAGCGCAGGAAGAGGATGTTCATGATGGCCAGTAAGGGGCACGGCCCGTTCTCGCTCTGGGTGATGATGGGCGTGGTCTTGCCTTTCCAATTGATCCACTTCACAAAGTAGTAGGCGGGCATGGCGTCGTGGTCCGGGGCGGCAGCTGCTGCGACGGGAGTGCCGGCGGCCTGGTCCCCGAGGGGGACGCCTCGGATCCCCCAGCGTCCGAGACGGCATCTTCCGCGCCCGCCGGCTCCATCCTGTCCTTCACGTCGCTTACACCTGGCTTCTCGGCACGCTCTTCCTCTGCAGCGGGCAGCGCGGTGGACGGTTCACTTTTCCAAGCAGGCGCCGGCTCGGTCTCCATCAGCTGCTCCTTGTTGACGCCCTGAGGCTCGCTGTTGATGATCTCTGAGCTGCAGTCGGCCATGGCTCGGCAAACAGGGGTGTTATGTGAAATACGAGGGTTCACGGGTCAACCTTTGCCCTCTGCCCTACACAACCAAGGGGTTTCacgatttctctctctctctctcagggcctTATCTTAAACTGAGGTTTTATCCCTAAGTGATGATGAATTGTGTTGAGTAAAGAGGCTTTTTTGGATGCTTCAACACTATCCTACCCAAGCCAGATGCAAGAACAAGTGTCTATTCAAAAGATATTGAAATGTTGTTGTGcgtgtttttttcctcttttacaTTCCTGAGTTACGGCAATTTTGAACTTCCAGAGAAATGACACCAGGGGCGGCTATGACTCCAGTGGACACGGCAGCATTCTTAAGTCTTAAGTATTAAATAGTGCGATCATGTGGATTTAACAGTTTTAGCAATAAGACACTGTGGATTTATAGGTTTcaccttctccctgctctcttCTTACAATCTTTTTGCTTGACGAGTTTTACTTTGTCGTACTTGTCACAAAAATATTTAGCAGTAACCGCATGCTCAACGTTACGGTTTCGTACAAAACATTTGCTTACAAAACTGTGTTAATCttagaataaatataattgcaatgttgaatatataaaatatacagctctagCTTAATgcttagtacaagaaaaaaaactgaattaaaacgCTGACTGATACATTTAAAGTCCCTTTATCCTCCGATTTGTGGTTTAGGATGAACAAGATGCGTTTTAAATAGAATGgggctaaaaaacaaaaaccccaaTTAAaaaccaattaaccaattaagacCACTCATCTTTTGTTGTGTGCTTCTTGCATCACATTTATCGTCAATGCCCGACCTCCCTTCCCCTGCCCTGTGGCGTCTATGTAGTGTTTGAGACTCGGAGAAACGAGGAGAGGTGTGGATTGCGAGAGCCTGGTTTGAACTCGCACCGTCGGATTTATTTTCCACTGAAGGTCAAGTCAGTCGTACCTTCGTCGAGGGTATTCGAGTCACCATAGCGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172078 True 1443 lncRNA 0.48 2 18473233 18474916

Neighbor

gene id symbol gene type direction distance location
AMCG00012453 NA coding upstream 6648 18445111 ~ 18466585 (+)
AMCG00012452 pi4kb,LOC107588477,LOC107556110 coding upstream 30882 18416963 ~ 18442351 (+)
AMCG00012451 LOC101076171,LOC102795628 coding upstream 58321 18402305 ~ 18414912 (+)
AMCG00012454 selenbp1,LOC107588475,LOC107556087 coding upstream 71556 18389831 ~ 18401677 (+)
AMCG00012446 NA coding upstream 97240 18353011 ~ 18375993 (+)
AMCG00012457 NA coding downstream 1795 18476711 ~ 18491471 (+)
AMCG00012456 NA coding downstream 18668 18493584 ~ 18512606 (+)
AMCG00012458 NA coding downstream 70662 18545578 ~ 18552814 (+)
AMCG00012466 LOC107741773,LOC108262134,LOC106580947,LOC108441933,LOC106605334 coding downstream 421498 18896414 ~ 18908734 (+)
AMCG00012464 tnfaip8l2,LOC106605333,LOC105031250,LOC106580940,LOC107587822 coding downstream 440302 18915218 ~ 18925049 (+)
G136866 NA non-coding upstream 2449 18433570 ~ 18470784 (+)
G136848 NA non-coding upstream 156157 18295215 ~ 18317076 (+)
G136842 NA non-coding upstream 203726 18261897 ~ 18269507 (+)
G136718 NA non-coding upstream 571577 17900908 ~ 17901656 (+)
G136571 NA non-coding upstream 809063 17663433 ~ 17664170 (+)
G136969 NA non-coding downstream 140982 18615898 ~ 18653598 (+)
G137007 NA non-coding downstream 427596 18902512 ~ 18902871 (+)
G137016 NA non-coding downstream 457508 18932424 ~ 18933248 (+)
G137031 NA non-coding downstream 489618 18964534 ~ 18972066 (+)
G137027 NA non-coding downstream 545242 19020158 ~ 19026005 (+)
G136864 psmb4 other upstream 84927 18385289 ~ 18388306 (+)
AMCG00012439 NA other upstream 338852 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 569423 17902832 ~ 17903810 (+)
G136658 NA other upstream 629312 17840933 ~ 17843921 (+)
AMCG00012423 LOC102799202,LOC107564869 other upstream 677989 17792251 ~ 17795244 (+)
AMCG00012460 NA other downstream 64629 18539545 ~ 18544490 (+)
AMCG00012471 NA other downstream 572581 19047497 ~ 19053829 (+)
G137083 NA other downstream 694832 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 762773 19237689 ~ 19238958 (+)
AMCG00012480 NA other downstream 857412 19332328 ~ 19350202 (+)

Expression


Co-expression Network