G136969


Basic Information

Item Value
gene id G136969
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18615898 ~ 18653598 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172188
tttatttttaacttttattatgatttcttttttttttttttgtaagtaacAGGGACAGACGGTATCGCATGAACCTCGGCTCAAATCTGAAAGCAAGTCCTCCAGGGCCACAGCCCACCCAGAAAACGCTGAACCCCTCTCTAGACACCACTCTCATGGTTtgcattgcaatgtttttaaaagagagaataaagagaaggagaaaaattAAACGACTGACCTGCTGACCGTTTCAAATCACCAGGGACACTTAACTGATCATCTCACTGGCCAGGATTTGAAATTCTCTCTCCTTTCATCTCAGACGGGGGTGAAACCTGGCCGGCCAGCACTAACGGGAACCACTGCCTTGATGGCGGTGTCACAGCACTACAGGCAGACAACAGATCTGCCACAGCGCTGCAACACAGCCGGCTCGTTCTCCCCAGAGATCTCTCCGGGAAATGCTTTGCTGAGACAAGCCGAGCGCATTTCCCTCCTCGAGCGCTCTCTCCGTGTTGATCTGAGAAGATGGACCAGCACAGGAGGCTGTGAGAACTCCCTTTGTTACTCGCTGTTGGGTTTACATTTTCCAATAGGGAATTTCCAATAAATAAACTACTTTATATGGGACTGTGGATATTCTCACAGATTTATAGTGAAACAGCAGTAAgatcagggagagagagagagaaagaaggagaggaaaagagagatggggaggatgggggagaggaagagggaaagagatggacaggggaagagagagagagatgggcagggagagggagagagagatagagggagggagagagaaatggggaggaagagagagagagagaatggtgCGGTCAGACGGGATCAAGGACAGGATAGTGTCCCATTCAGCGCTTCGTCGGTGGGCTATGCAGCCTGGCACGCTCTACTGATAGTCTGAAcatacagtgtattttttttttctgaaatccaagaaaaaaaaacgaaaaaaaaaacaagaaacaaactgtAGCCTCAAGCTGACAGCTTCTATGCCAATTTCAATTACAACGGTCACACGTGGTAGTACTGTTTTGCAGGTTGGGATATCAAAAAGGCCTAactgataaaaatacaaatatacaatggCTATGACACATCTTGACATtacgttaaaaaaaacaacaaacagtaaaacaaagaaaactcaCCCCCccgaaataaaaataaaataaaaacacctaaTTAGCCTCTTTGATCTTTCCCAgtaccccccgccccccaatagcacatattatattaaataaggcacacatttacacatacaattaaaatttgGCTAGTTATTGAAATTATTCCACAGGCTTCTTTATTTACACTGATATCCACAAAGTTATTAATCACCGCAGTCTGTAGTAGATTAAAATCTGGGCTGAACTCGAGCCGTCTTGGTTTTTGAAAAGAAGGAGCTTTTCCCAAAACCACACGCGCCAAAACCCACCAGTATTCTCCAGTTCAATTCGTGTCCGTTTCACCTGGAGGAATTGGGGTGTTTGCCGTGGCGGCACATGCGGGCTCTCGTGTTTGGgggcgaggaggaggaagagttgTCCAACAAAGCGACGGAGGAAAACCAAACCACTTCCGCGCGTTTCGGAATCCGCCTCGATTCCAAATGACGACGCCCGGAAGTCATCCCCCAATCCCCGGCCCCCCAATATACGAGATCAACACATTCTCCCCAGGTGTATATGGCTTGAGGCTTTTACCACAGTCCAGGCAAAGGTGAAGCAGAGGGGggggggggcatC
>TU172189
tttatttttaacttttattatgatttcttttttttttttttgtaagtaacAGGGACAGACGGTATCGCATGAACCTCGGCTCAAATCTGAAAGCAAGTCCTCCAGGGCCACAGCCCACCCAGAAAACGCTGAACCCCTCTCTAGACACCACTCTCATGGTTtgcattgcaatgtttttaaaagagagaataaagagaaggagaaaaattAAACGACTGACCTGCTGACCGTTTCAAATCACCAGGGACACTTAACTGATCATCTCACTGGCCAGGATTTGAAATTCTCTCTCCTTTCATCTCAGACGGGGGTGAAACCTGGCCGGCCAGCACTAACGGGAACCACTGCCTTGATGGCGGTGTCACAGCACTACAGGCAGACAACAGATCTGCCACAGCGCTGCAACACAGCCGGCTCGTTCTCCCCAGAGATCTCTCCGGGAAATGCTTTGCTGAGACAAGCCGAGCGCATTTCCCTCCTCGAGCGCTCTCTCCGTGTTGATCTGAGAAGATGGACCAGCACAGGAGGCTGTGAGAACTCCCTTTGTTACTCGCTGTTGGGTTTACATTTTCCAATAGGGAATTTCCAATAAATAAACTACTTTATATGGGACTGTGGATATTCTCACAGATTTATAGAAAAACAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172188 True 1766 lncRNA 0.46 2 18615898 18653598
TU172189 False 648 lncRNA 0.46 2 18615898 18637938

Neighbor

gene id symbol gene type direction distance location
AMCG00012458 NA coding upstream 63084 18545578 ~ 18552814 (+)
AMCG00012456 NA coding upstream 103292 18493584 ~ 18512606 (+)
AMCG00012457 NA coding upstream 124427 18476711 ~ 18491471 (+)
AMCG00012453 NA coding upstream 149313 18445111 ~ 18466585 (+)
AMCG00012452 pi4kb,LOC107588477,LOC107556110 coding upstream 173547 18416963 ~ 18442351 (+)
AMCG00012466 LOC107741773,LOC108262134,LOC106580947,LOC108441933,LOC106605334 coding downstream 242816 18896414 ~ 18908734 (+)
AMCG00012464 tnfaip8l2,LOC106605333,LOC105031250,LOC106580940,LOC107587822 coding downstream 261620 18915218 ~ 18925049 (+)
AMCG00012465 LOC107732464 coding downstream 279986 18933584 ~ 18937478 (+)
AMCG00012470 NA coding downstream 401042 19054640 ~ 19065913 (+)
AMCG00012474 onecut1,LOC107746960 coding downstream 446721 19100319 ~ 19109503 (+)
G136873 NA non-coding upstream 140982 18473233 ~ 18474916 (+)
G136866 NA non-coding upstream 145114 18433570 ~ 18470784 (+)
G136848 NA non-coding upstream 298822 18295215 ~ 18317076 (+)
G136842 NA non-coding upstream 346391 18261897 ~ 18269507 (+)
G136718 NA non-coding upstream 714242 17900908 ~ 17901656 (+)
G137007 NA non-coding downstream 248914 18902512 ~ 18902871 (+)
G137016 NA non-coding downstream 278826 18932424 ~ 18933248 (+)
G137031 NA non-coding downstream 310936 18964534 ~ 18972066 (+)
G137027 NA non-coding downstream 366560 19020158 ~ 19026005 (+)
G137074 NA non-coding downstream 459172 19112770 ~ 19114862 (+)
AMCG00012460 NA other upstream 71408 18539545 ~ 18544490 (+)
G136864 psmb4 other upstream 227592 18385289 ~ 18388306 (+)
AMCG00012439 NA other upstream 481517 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 712088 17902832 ~ 17903810 (+)
G136658 NA other upstream 771977 17840933 ~ 17843921 (+)
AMCG00012471 NA other downstream 393899 19047497 ~ 19053829 (+)
G137083 NA other downstream 516150 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 584091 19237689 ~ 19238958 (+)
AMCG00012480 NA other downstream 678730 19332328 ~ 19350202 (+)
G137252 NA other downstream 1161327 19814925 ~ 19815617 (+)

Expression


Co-expression Network