AMCG00012470


Basic Information

Item Value
gene id AMCG00012470
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19054640 ~ 19065913 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012470
GTCGCTCCGACTTGCAGCAAGTTCGGATGCCCTCGCGTAACAGGAAGTTTTCTGTTTACTTTGTAACTCCAGCAAGTCGGAGGGGAAACAGCTTGGTGCCCGTTGTCATTTTCGCGCTGCCCGAAAAGGACGGCTCCGAGGGGGGGAAAGCGTGCACTTGTAGGAAAGCCACAGCCGACACGACGCCTCGGAGGAAAAGCGCAGCAGTGGGCAGCTGGCAGCATGAGCACCTTGACCCATAGGAATCGGCGCTCAGAGGCAGCGGTGCTGGTGAAGAAGGGGTCCAATGAGGAGGAGTCGGGCCGGGGGGGGGAcgccgaggaggaggaggacttCGGGGACTCCAAGAACTTGCGGCTGACCCTGATGGAGGAAGTCCTGCTGCTCGGCCTCAAAGACAAGGAGGTGATCCTGAAGTCCGACGCCCCCACGGGGGACGTGCTCCTGGACGAGGCCCTGAAGCACATAAAGGCCACCGAGCCCGCCGAGACGGTGCAGAGCTGGATTGAGCTCCTCACCGgCGAGACGTGGAACCCCCTGAAGCTGCACTACCAGCTGCGCAACGTGCGGGAGCGGCTGGCCAAGAACCTGGTGGAGAAGGGCATCCTGACCACAGAGAAGCAGAACTTCCTGCTGTTCGACATGACCACACACCCGGTGACCAACACCACGGAGAAGCAGCGGCTGGTGAAGCGGGTGCAGGGCAGCCTGCTGGAGCGCTGGGTGAACGACACGCAGCGCATGGACCGGCGCATGCTGGCGCTCATCGTGCTGGCCAATGCCTCGGACGTGCTGGAGAATGTGTTCACGGCGCTGTCGGACGAGCAGTACGAAACGGCCACGGCGCGCTCCAAGGCCCTGCTCGACAGCGACCCCGAGGTGGAGGGGGCCAAGGCGCGGGCCTGCGAGATGATCTGGGCCGTCATGGCCGCCTTCAACAAAGCCTGAGCACAACAGAATGATCCGGAAACGGACacaaagactttttttttggggagggggcggggtctcttttttttttttttttcggttttGTTTCTTCGATTTATCCGTGTTATTCTGTGGATCGGTTTGTCCCCACCTTCTCCAGAGACAGAAACCTTAACGTTTTGTGGCTTCCGTGAGCTCGCTGGCACGTCTGCGGCCTTCCGTGTTCTAGCACACGGTCACCCCCCTCCCGTGAAACCCGATTCCGTTCTTTTACAcgtatacgtatatatatatattttctttgtttttcgtTTTGTCGGTTTTGCCCTCGACCTATCCCCCCAAAAGACTGAAATGAAAAGACCTTTGACCTAGAGTTCCTGTGACCTGGCGAAGATTCGGGTGGGGGGTGCAGGGCGGGCACTTGGGGGGCAATTGTAACGATCTAGCTGGCCAAACCTTCAATAAAACCTGATTCTGCTTTTATGTTCATGATTTTTGTTtgccctccccccccacccgtCTTCTCCAGAACTGTCGTTTCTGATCGCCAGAttgacatttcttttcattcgCAAGATGAAAAACATTAACTTTCTAATTGTAAATATGTCTGAGCACTGCTGCCTAAACCCAGTCCTCGAGGACCCCTATCTGACCttttaattatcaatttcttCACGCCTGGAACTGTTTAAATGCAATCAGTGAAGCAGCTGATTTGTGAAAAAGTTCTGTAGAGTTTtgatacaaagaaaataaatgacccTTTTCAGCCCAGACAAGAATTCCCTAGTTAATTgcaagttaattgcttaattggtcAGTTACTTCTGTGTGGtctgttgaaataaatgatttaGGCTGAGAAAACATACTGGATAGGGGCTCCCAGGACCGTGTTTTGGCACCACTGTGTCAAAGTGACCATTTATCCTCTAGTAGATACTTAAAAATCTGCAATCACAGCTTCCAATCAGAGCAGGCAGACTAATCGGCTCTGACGGGGACAAGAAATGCAAGACAGCTGATTGGCCCACTTGGATTTTCATGTGCTGCAATTGGCCTTCTCCGATTGGTCTTGGCAAATGTGTAACAATTTTGCACATTAATATCTTTCAAATGAAGTATTAACCCCCCTCCTTGTTCTGTCTCCAAGTGTCCAAGGGATTATGGGATATGTTCACCCTAGTCATGGGTCAAGAGTGCTAAGCCCCATCTTTATCCTGAACtgatcattgttgttgttttgtttaaagtgCGTCCAAGTATGGCATTGGGCTGGCGTGTGGAAAGAAAGCTGATTTGGGTGCCGCTTTTGCATCCCCATCAGACATTGGCGTCAGATACCCACCTCACTGTGCCCAAAAGAGGGATGCCGGTTTGCCGTTGTGCCACACGGTGGATGCCTGAGTTGTGATCGGTTGTTTGCCTGTTAGTACGTTATACGTACTCGGGGGCACATCTGAGAGTTTTGGCTCCAGTGCCACCCCCTTCATTCAATATCTTTTGAAAGTGTCTTTGAGGATTGCTTTGACGCACTTTGTCCTTCCTCAGCCACCGTCCGCATGTGATCAAGgatgctttgttttgttgtttttgtttcccaccCCCCATTATTataatcttttcttttcccctctcttcCTGTTCTGCTCGGGTAAAGGCTGACCGCTGTCTCCGCTTTTATTCCCTATGTGAAACTGAATTTCTTTCACGCGGGTGCAGACGTCCCTGTCTGAGTCAAAGAATACCTTCCAGGTTTCCTATTGGAGCCAAAACAGACACGCATGCCCCAAAGGAACCGGCGTTACACCCGAAAGCTTCCTACTGGAGCCTGTTTTCTCCGAAGTGATTCCTACTGGGGACACAACGCCTGTGTTGTGAATAAACAACGGCGCACAAACGGATTAATTTCTAATGAACAAAAGGAAACTCGCAAAAGGTGCGAGACTGACACAGGAGCACTGACAGTAGCTCCCTCTAGTGTTCCGTGCCACTGGTAAACACTTGAACCCGGGGCCGAGACTCTGGTGTGAAAAATCCCCACCGTGTCTTTGGAAAGGGCACCTTCCAACGCCTTCCCTGGACTGTGGAAGTTTCCTCTCATTTACTGTTTTCACTCTTTCTCAAACCTGTGGGGGCTGTTTCTGGGAAATATATATGGTTATCTGGCTGCTTTAGCTTGATAGGCTGGTGTTCAGGTCTAAGGGGCTGTTGGGATTGTTGGGCTGTTGTGAGTTTTCCTCAGTTTCTTCACCAGCTGGGACTCACAGGAGCTGTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012470 True 3216 mRNA 0.51 4 19054640 19065913

Neighbor

gene id symbol gene type direction distance location
AMCG00012465 LOC107732464 coding upstream 117162 18933584 ~ 18937478 (+)
AMCG00012464 tnfaip8l2,LOC106605333,LOC105031250,LOC106580940,LOC107587822 coding upstream 129591 18915218 ~ 18925049 (+)
AMCG00012466 LOC107741773,LOC108262134,LOC106580947,LOC108441933,LOC106605334 coding upstream 145906 18896414 ~ 18908734 (+)
AMCG00012458 NA coding upstream 501826 18545578 ~ 18552814 (+)
AMCG00012456 NA coding upstream 542034 18493584 ~ 18512606 (+)
AMCG00012474 onecut1,LOC107746960 coding downstream 34406 19100319 ~ 19109503 (+)
AMCG00012476 NA coding downstream 205397 19271310 ~ 19273160 (+)
AMCG00012479 NA coding downstream 211803 19277716 ~ 19294096 (+)
AMCG00012481 NA coding downstream 234900 19300813 ~ 19333427 (+)
AMCG00012483 NA coding downstream 395378 19461291 ~ 19467495 (+)
G137027 NA non-coding upstream 28635 19020158 ~ 19026005 (+)
G137031 NA non-coding upstream 82574 18964534 ~ 18972066 (+)
G137016 NA non-coding upstream 121392 18932424 ~ 18933248 (+)
G137007 NA non-coding upstream 151769 18902512 ~ 18902871 (+)
G136969 NA non-coding upstream 401042 18615898 ~ 18653598 (+)
G137074 NA non-coding downstream 46857 19112770 ~ 19114862 (+)
G137079 NA non-coding downstream 59928 19125841 ~ 19126313 (+)
G137080 NA non-coding downstream 73212 19139125 ~ 19161143 (+)
G137110 NA non-coding downstream 168497 19234410 ~ 19236788 (+)
G137130 NA non-coding downstream 256093 19322006 ~ 19322259 (+)
AMCG00012471 NA other upstream 811 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 510150 18539545 ~ 18544490 (+)
G136864 psmb4 other upstream 666334 18385289 ~ 18388306 (+)
AMCG00012439 NA other upstream 920259 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 1150830 17902832 ~ 17903810 (+)
G137083 NA other downstream 103835 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 171776 19237689 ~ 19238958 (+)
AMCG00012480 NA other downstream 266415 19332328 ~ 19350202 (+)
G137252 NA other downstream 749012 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 825254 19891167 ~ 19895599 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014384 golph3l coding NC_007130.7 CM002903.2 329808 ~ 340641 (-)
grasscarp (Ctenopharyngodon idella) CI01000117_00218076_00225659 NA coding CI01000117 null 217605 ~ 226934 (+)