G137074


Basic Information

Item Value
gene id G137074
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19112770 ~ 19114862 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172311
CAAGATCAGAGACCTAATGGAAAGGCGGGGGTAGGGGGATTTTAAATGTGACGGAGAGGCAGTTGTAACAGGACAGTGAATTGCTAGGCGATGCTCAAACCAGGGAGTGGAGAAAGTAAAGCCCTGAACTTAGAATCTGGTGTTCAAAGGTATAACAGTAACACCGAATCCCAGATGTAAGAGACTTAATGGGGGGCTTGCATGTTTGCTGCTATTGTAGATCTGGACATGGGAACTGAGAAAATGGCTCAGTGGCCTCAGGTCAATTACTACCAAACTATCTCCCCTGCCAGGCATCCATACATGCATCTCTTAATATGAAGCTTTGGCCAAGTTTAAGCAAATTCCTCCGCCAGTCTCCCAAATGAGATGACTGGACTTTTTTCCATTGACTCGGCTTGGCTCCGTTAAGCAGGATTTCTTACTGTCCATAATTTATGTTGGACAAGctgattatgataataatcataacaataataaagataatgaTAACAAAACAGTACATAAACCAGATAATAAGCACATTTATTGGTTTCTCGGGCTGATGTTgtatttcagaatatttaaaCGGGATTGTACACTGAAACaagctgtaattatatattcattacagtgtattttttgtttttgttctttgtgtatTGGACTAATCGAGATAATTTGCCCATTTCATTAGTCAAGTGGTTTTCCCTTTCCCAAGATGGAAAAGAAAGTCTGAAAGCTCCtagctggttttgttttgtacaaaaaaaagaaaagataaaaaaaatcctgttcaGGCCAAGCGTTACAATGAAACATATCTGTCTACCTCAAACGTGTGACATCTCACAGGCCACACTTTGCTAAACCAAAGATCAAAAACCAaatcatgcttttttcttttttgtttaaagacgCACATGCAGACAAAACTCCTGCTTCATTTCCAAAAAAGATGAAACCcgcaaaaaaaaatccaatcttACCCAAGGTCACATAACTGTGTGTTGGGGAAATCAGTCTTAGATTTCAGTTCAACCTGTTGACCAGATCTTAGTTTTGCTACTTTTGAATGATTTAAACTAAAAAGCAGGAATAAAATGACAATcctagaaaaagaaagacatgcaAATTCTTGTTTATAAGTTGATTTCCCCTTGAATACTGGGGCTGGAGAAggaaagacagaaaatacagaGGGGAAAGTGAGAAGTTAGACATTTTTCCAACTTTGAGACAAATAGtgttcatgttttgtaattaatatgaTTTGATTGGATTTTGATGTACAGATTCCACCACCCCATTACACAAAAAGATTCCCTCCAAAACAGGGATCAGACAAGAAAAACCTGCtgtgcgtgtgttttttttattctgtattttttcttctcaaataaTGAAGCACTGTTTCcactgaactgaactggaaagagagaggagacacaAACATGCCCTGAATGCAATGTAAAGAGTTTAATGAGGCAGGATGCATCATGGGATTTTGGAGGTGTCATTCCCATAAAGTGGTGAATAGCAATGTGGAAAACTGCTGAAGTGAAGAGCAGAACGGAAAGCCAAATTCTGGGCAAATAAGAGACTGGAGAATACAGGAGTGGAAATGATTCTTCCCTTGTATtgagtgttttctttatttgtttagttgtatCTTTGTATCTAGGGttgtaaagcaaaataatttgatctgtctgtctgtgtgtcacaaACAGTGTCTGGATTTCCAGGTGTTGGTGTTTCTTTTCTATCCTTCGACACCATTCTTGGGTTTTCTAAATCCAGTACAATGGTAAAAATGCCCCAGAAGTCCTTTCACCTCTGTCATCaattctctcctctctcctgttaTTTTCTATCTGTGTTGGACTCGTTTGAACTTTTAATGAATGTGGCTAAATAACCAAAGgctaataataagaataataaaataataataataatggtaactctttaaactttaaacGTTGTGGGACATTTTGTACTAAAAAAAttgtaagaaagaaagaaacaactaAATTTCTTCAAATACCTCATGATGTGAAATTGTTTGTCGTGATGTTGCactaaaactattaaaatgatCTGTAATTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172311 True 2093 lncRNA 0.37 1 19112770 19114862

Neighbor

gene id symbol gene type direction distance location
AMCG00012474 onecut1,LOC107746960 coding upstream 3267 19100319 ~ 19109503 (+)
AMCG00012470 NA coding upstream 46857 19054640 ~ 19065913 (+)
AMCG00012465 LOC107732464 coding upstream 175292 18933584 ~ 18937478 (+)
AMCG00012464 tnfaip8l2,LOC106605333,LOC105031250,LOC106580940,LOC107587822 coding upstream 187721 18915218 ~ 18925049 (+)
AMCG00012466 LOC107741773,LOC108262134,LOC106580947,LOC108441933,LOC106605334 coding upstream 204036 18896414 ~ 18908734 (+)
AMCG00012476 NA coding downstream 156448 19271310 ~ 19273160 (+)
AMCG00012479 NA coding downstream 162854 19277716 ~ 19294096 (+)
AMCG00012481 NA coding downstream 185951 19300813 ~ 19333427 (+)
AMCG00012483 NA coding downstream 346429 19461291 ~ 19467495 (+)
AMCG00012484 NA coding downstream 361520 19476382 ~ 19483546 (+)
G137027 NA non-coding upstream 86765 19020158 ~ 19026005 (+)
G137031 NA non-coding upstream 140704 18964534 ~ 18972066 (+)
G137016 NA non-coding upstream 179522 18932424 ~ 18933248 (+)
G137007 NA non-coding upstream 209899 18902512 ~ 18902871 (+)
G136969 NA non-coding upstream 459172 18615898 ~ 18653598 (+)
G137079 NA non-coding downstream 10979 19125841 ~ 19126313 (+)
G137080 NA non-coding downstream 24263 19139125 ~ 19161143 (+)
G137110 NA non-coding downstream 119548 19234410 ~ 19236788 (+)
G137130 NA non-coding downstream 207144 19322006 ~ 19322259 (+)
G137144 NA non-coding downstream 246482 19361344 ~ 19395753 (+)
AMCG00012471 NA other upstream 58941 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 568280 18539545 ~ 18544490 (+)
G136864 psmb4 other upstream 724464 18385289 ~ 18388306 (+)
AMCG00012439 NA other upstream 978389 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 1208960 17902832 ~ 17903810 (+)
G137083 NA other downstream 54886 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 122827 19237689 ~ 19238958 (+)
AMCG00012480 NA other downstream 217466 19332328 ~ 19350202 (+)
G137252 NA other downstream 700063 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 776305 19891167 ~ 19895599 (+)

Expression


Co-expression Network