RNA id: AMCG00012470


Basic Information

Item Value
RNA id AMCG00012470
length 3216
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00012470
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19054640 ~ 19065913 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGCTCCGACTTGCAGCAAGTTCGGATGCCCTCGCGTAACAGGAAGTTTTCTGTTTACTTTGTAACTCCAGCAAGTCGGAGGGGAAACAGCTTGGTGCCCGTTGTCATTTTCGCGCTGCCCGAAAAGGACGGCTCCGAGGGGGGGAAAGCGTGCACTTGTAGGAAAGCCACAGCCGACACGACGCCTCGGAGGAAAAGCGCAGCAGTGGGCAGCTGGCAGCATGAGCACCTTGACCCATAGGAATCGGCGCTCAGAGGCAGCGGTGCTGGTGAAGAAGGGGTCCAATGAGGAGGAGTCGGGCCGGGGGGGGGAcgccgaggaggaggaggacttCGGGGACTCCAAGAACTTGCGGCTGACCCTGATGGAGGAAGTCCTGCTGCTCGGCCTCAAAGACAAGGAGGTGATCCTGAAGTCCGACGCCCCCACGGGGGACGTGCTCCTGGACGAGGCCCTGAAGCACATAAAGGCCACCGAGCCCGCCGAGACGGTGCAGAGCTGGATTGAGCTCCTCACCGgCGAGACGTGGAACCCCCTGAAGCTGCACTACCAGCTGCGCAACGTGCGGGAGCGGCTGGCCAAGAACCTGGTGGAGAAGGGCATCCTGACCACAGAGAAGCAGAACTTCCTGCTGTTCGACATGACCACACACCCGGTGACCAACACCACGGAGAAGCAGCGGCTGGTGAAGCGGGTGCAGGGCAGCCTGCTGGAGCGCTGGGTGAACGACACGCAGCGCATGGACCGGCGCATGCTGGCGCTCATCGTGCTGGCCAATGCCTCGGACGTGCTGGAGAATGTGTTCACGGCGCTGTCGGACGAGCAGTACGAAACGGCCACGGCGCGCTCCAAGGCCCTGCTCGACAGCGACCCCGAGGTGGAGGGGGCCAAGGCGCGGGCCTGCGAGATGATCTGGGCCGTCATGGCCGCCTTCAACAAAGCCTGAGCACAACAGAATGATCCGGAAACGGACacaaagactttttttttggggagggggcggggtctcttttttttttttttttcggttttGTTTCTTCGATTTATCCGTGTTATTCTGTGGATCGGTTTGTCCCCACCTTCTCCAGAGACAGAAACCTTAACGTTTTGTGGCTTCCGTGAGCTCGCTGGCACGTCTGCGGCCTTCCGTGTTCTAGCACACGGTCACCCCCCTCCCGTGAAACCCGATTCCGTTCTTTTACAcgtatacgtatatatatatattttctttgtttttcgtTTTGTCGGTTTTGCCCTCGACCTATCCCCCCAAAAGACTGAAATGAAAAGACCTTTGACCTAGAGTTCCTGTGACCTGGCGAAGATTCGGGTGGGGGGTGCAGGGCGGGCACTTGGGGGGCAATTGTAACGATCTAGCTGGCCAAACCTTCAATAAAACCTGATTCTGCTTTTATGTTCATGATTTTTGTTtgccctccccccccacccgtCTTCTCCAGAACTGTCGTTTCTGATCGCCAGAttgacatttcttttcattcgCAAGATGAAAAACATTAACTTTCTAATTGTAAATATGTCTGAGCACTGCTGCCTAAACCCAGTCCTCGAGGACCCCTATCTGACCttttaattatcaatttcttCACGCCTGGAACTGTTTAAATGCAATCAGTGAAGCAGCTGATTTGTGAAAAAGTTCTGTAGAGTTTtgatacaaagaaaataaatgacccTTTTCAGCCCAGACAAGAATTCCCTAGTTAATTgcaagttaattgcttaattggtcAGTTACTTCTGTGTGGtctgttgaaataaatgatttaGGCTGAGAAAACATACTGGATAGGGGCTCCCAGGACCGTGTTTTGGCACCACTGTGTCAAAGTGACCATTTATCCTCTAGTAGATACTTAAAAATCTGCAATCACAGCTTCCAATCAGAGCAGGCAGACTAATCGGCTCTGACGGGGACAAGAAATGCAAGACAGCTGATTGGCCCACTTGGATTTTCATGTGCTGCAATTGGCCTTCTCCGATTGGTCTTGGCAAATGTGTAACAATTTTGCACATTAATATCTTTCAAATGAAGTATTAACCCCCCTCCTTGTTCTGTCTCCAAGTGTCCAAGGGATTATGGGATATGTTCACCCTAGTCATGGGTCAAGAGTGCTAAGCCCCATCTTTATCCTGAACtgatcattgttgttgttttgtttaaagtgCGTCCAAGTATGGCATTGGGCTGGCGTGTGGAAAGAAAGCTGATTTGGGTGCCGCTTTTGCATCCCCATCAGACATTGGCGTCAGATACCCACCTCACTGTGCCCAAAAGAGGGATGCCGGTTTGCCGTTGTGCCACACGGTGGATGCCTGAGTTGTGATCGGTTGTTTGCCTGTTAGTACGTTATACGTACTCGGGGGCACATCTGAGAGTTTTGGCTCCAGTGCCACCCCCTTCATTCAATATCTTTTGAAAGTGTCTTTGAGGATTGCTTTGACGCACTTTGTCCTTCCTCAGCCACCGTCCGCATGTGATCAAGgatgctttgttttgttgtttttgtttcccaccCCCCATTATTataatcttttcttttcccctctcttcCTGTTCTGCTCGGGTAAAGGCTGACCGCTGTCTCCGCTTTTATTCCCTATGTGAAACTGAATTTCTTTCACGCGGGTGCAGACGTCCCTGTCTGAGTCAAAGAATACCTTCCAGGTTTCCTATTGGAGCCAAAACAGACACGCATGCCCCAAAGGAACCGGCGTTACACCCGAAAGCTTCCTACTGGAGCCTGTTTTCTCCGAAGTGATTCCTACTGGGGACACAACGCCTGTGTTGTGAATAAACAACGGCGCACAAACGGATTAATTTCTAATGAACAAAAGGAAACTCGCAAAAGGTGCGAGACTGACACAGGAGCACTGACAGTAGCTCCCTCTAGTGTTCCGTGCCACTGGTAAACACTTGAACCCGGGGCCGAGACTCTGGTGTGAAAAATCCCCACCGTGTCTTTGGAAAGGGCACCTTCCAACGCCTTCCCTGGACTGTGGAAGTTTCCTCTCATTTACTGTTTTCACTCTTTCTCAAACCTGTGGGGGCTGTTTCTGGGAAATATATATGGTTATCTGGCTGCTTTAGCTTGATAGGCTGGTGTTCAGGTCTAAGGGGCTGTTGGGATTGTTGGGCTGTTGTGAGTTTTCCTCAGTTTCTTCACCAGCTGGGACTCACAGGAGCTGTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172291 lncRNA upstream 811 19051944 ~ 19053829 (+) False AMCG00012471
TU172255 lncRNA upstream 28635 19020158 ~ 19026005 (+) True G137027
TU172261 lncRNA upstream 82574 18964534 ~ 18972066 (+) True G137031
TU172242 lncRNA upstream 121392 18932424 ~ 18933248 (+) True G137016
TU172232 lncRNA upstream 151769 18902512 ~ 18902871 (+) True G137007
TU172311 lncRNA downstream 46857 19112770 ~ 19114862 (+) True G137074
TU172316 lncRNA downstream 59928 19125841 ~ 19126313 (+) True G137079
TU172318 lncRNA downstream 73212 19139125 ~ 19161143 (+) True G137080
TU172357 lncRNA downstream 168497 19234410 ~ 19236788 (+) True G137110
TU172358 lncRNA downstream 168497 19234410 ~ 19235931 (+) False G137110
AMCG00012471 mRNA upstream 1420 19047497 ~ 19053220 (+) True AMCG00012471
AMCG00012465 mRNA upstream 117162 18933584 ~ 18937478 (+) True AMCG00012465
AMCG00012464 mRNA upstream 129591 18915218 ~ 18925049 (+) True AMCG00012464
AMCG00012466 mRNA upstream 145906 18896414 ~ 18908734 (+) True AMCG00012466
AMCG00012458 mRNA upstream 501826 18545578 ~ 18552814 (+) True AMCG00012458
AMCG00012474 mRNA downstream 34406 19100319 ~ 19109503 (+) True AMCG00012474
AMCG00012476 mRNA downstream 205397 19271310 ~ 19273160 (+) True AMCG00012476
AMCG00012479 mRNA downstream 211803 19277716 ~ 19294096 (+) True AMCG00012479
AMCG00012481 mRNA downstream 234900 19300813 ~ 19333427 (+) True AMCG00012481
AMCG00012480 mRNA downstream 268783 19334696 ~ 19350202 (+) False AMCG00012480
TU172158 other upstream 510150 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 666334 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 920259 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 1150830 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 1210719 17840933 ~ 17843921 (+) True G136658
TU172324 other downstream 103835 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 171776 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 749012 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 825254 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 1265168 20331081 ~ 20341446 (+) True AMCG00012516

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028524 True 817 mRNA 0.57 3 NC_007130.7 332377 ~ 336777 (-)
grasscarp (Ctenopharyngodon idella) CI01000117_00218076_00225659.mRNA True 2589 mRNA 0.46 4 CI01000117 217605 ~ 226934 (+)