AMCG00012722


Basic Information

Item Value
gene id AMCG00012722
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5640001 ~ 5646627 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012722
CGGAGATAAAGGTATCGCATTTGTCTTTATAGGTGAGATAAATTGACAAGAGCACAATGGCACGAGGGGACAATGTTAACCAAGAGCTGTCGAAGATACTTAATGAGTTGTGGCAAGTGGATGAGAACAGGCTGAAGCCAGGGAAAGATTACATCATCTCTCTGCAGggGAAAGCAGGCTATGTGGCTCAAGGCAGCAATGCTGCCAGAGACCGGGCTTCGGCTCCATTGTTTTCTTTCGTGAATGAGGAACGGTTTAGAAGCATCAAGACCTATGCATATTTCATTAAGCTCCTGGACAACTATGAGATGTCAACTGGTGTTTCAGAGACTGTCACGAATGAGGAGTTGAAGGAAAACCACCTCTTTTTGGATGCCATTTTGGAGACAAAAGTAATGAAGCGTGCTCAGCAGTACCTAGTCAGTAAAAAGCAAGCAAGTGCAGATCCCAAAGAATTTAAGAAGCAGCTGTATGACATCTGGTTTCGGCTGTACCACAGAGACAGAAGTGGAGGgGAGGATTCCTGTGGATTTGAGCACGTGTTTGTTGGGGAGACAAAGTATGGCAAGGAAATCATGGGGTTCCATAACTGGGTCCAGTTTTACCTGCAGGAGAAGCTCAACCATGTTGATTACAAGGGATATAAAGCAAGGGATAACAAAGACACTCCAGATGAAGATGATCACATTTTGAATCTACAGTTCAGCTGGAAAGGCCTGGTGAAGCCTGTGGGAAGCACTTTCATTGGCGTCAGCCCAGAGTTTGAGTTTGCTCTCTTTACCATTGTCTTCCTCATGTCCCAGGAGAAAGTCACTAAGGCTGTGGTCAAAGTGGATGAATATCTTGTGGAGTTCGTCGTGTCCCGTCATGGGAGGTCAATTGGAACCTCCTATCCCAGGATGCTGAGTAGCAACAACCGGTAACAACCGGCAGGGAAATGTGGTTACTATACAATACTCCATCCGTTGTCAGGTTATAATCATCCGAGACACTCTTTTGACATTCTTGCCAAGTAATGACCAGAAGCTTAAAATTACAGTAATACCCTGTTTTACGTTGAGGATGtgaacaaaaaggaaatgtgcaAAATGAGTGTAACTTTAGGTTATAATTGAGGATGTACTCCAGGAGCATACAAACCATATTTAggttaaaaaacaatcacaaatatgtacattaaatacaaaataaaaatatattttacaaatgcaaaaaaatccCCTAAATGTTTGATTATGCAGAAAGGAAATTATGCAATATTTGAtattactgtatgttttttggggggtattTACAAAGCTTATTATATTCACTTAGTCCCTTACAAAAAGTCCTGTAGGTAGGGTAGGGTGTCCATATATAATGTTGTACCCTATACTACTTTTATATAATtcaatgataaatgtatttctatatgaaatattaaagttgttttttaaatacaatcaatGACAATGGTGTATAATTGATGCAATTGTTTTCATTCCCATAATGCAGTTGTTGACGTTGACATTAGCGAAACAACTAAAGGATAAGGCATATCTGTATACAAAAAGTCGTAAAACATGAATGTGCAAGTTATGTAACTTTCATTGACAGGTGccaaacaagaaaatgaattCAATAACTGCATCGATGTAATATTGGTGCAggacaaatacaaatgttattataCGTCATCTATTTTGACACTCTAACATACATGTACGTGTTTTATTCTTTTGGTCAATTTAATCCACTTCCCCACTTAGGCTTATTTGTTTCTATGCAATAGAAATTGTCCACATGTTGAGATattgcataaataaacacatgttgCCAAGATGTCTGTGCACTTCATCAATTGAATGTAGTTAGAAAGTAAATTTCCTTACAATTCCAGTAGCTTGTGACAACAGAATTAATAATGCATATGTCATGtccaaaatcaac

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
K14648 ENDOU, PP11; poly(U)-specific endoribonuclease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012722 True 1932 mRNA 0.38 7 5640001 5646627

Neighbor

gene id symbol gene type direction distance location
AMCG00012717 NA coding upstream 8882 5630403 ~ 5631119 (+)
AMCG00012723 NA coding upstream 10459 5603313 ~ 5629542 (+)
AMCG00012733 NA coding upstream 132000 5507669 ~ 5508001 (+)
AMCG00012719 si:ch211-245j22.3,LOC105895582,LOC104937698,LOC106573300,LOC107749310 coding upstream 327483 5305061 ~ 5312518 (+)
AMCG00012727 NA coding upstream 361887 5264273 ~ 5278114 (+)
AMCG00012725 polr3b coding downstream 48504 5695131 ~ 5724754 (+)
AMCG00012721 rfx4,LOC106561413,LOC106573296 coding downstream 85363 5731990 ~ 5763147 (+)
AMCG00012720 NA coding downstream 120579 5767206 ~ 5791485 (+)
AMCG00012729 NA coding downstream 386126 6032753 ~ 6039590 (+)
AMCG00012737 btbd11a,btbd11,LOC107757250,LOC107694300,LOC107592010 coding downstream 453954 6100581 ~ 6101610 (+)
G39279 NA non-coding upstream 202839 5436833 ~ 5437162 (+)
G39193 NA non-coding upstream 565875 5037547 ~ 5074126 (+)
G39186 NA non-coding upstream 684134 4949240 ~ 4955867 (+)
G38964 NA non-coding upstream 1122370 4517136 ~ 4517631 (+)
G38886 NA non-coding upstream 1663384 3974365 ~ 3976617 (+)
G39321 LOC100846954 non-coding downstream 1147 5647774 ~ 5648107 (+)
G39382 NA non-coding downstream 275987 5922614 ~ 5923023 (+)
G39445 NA non-coding downstream 638307 6284934 ~ 6287936 (+)
G39490 LOC103376870 non-coding downstream 866021 6512648 ~ 6536393 (+)
G39538 NA non-coding downstream 1115338 6761965 ~ 6762278 (+)
G39297 NA other upstream 87234 5552417 ~ 5552767 (+)
G38954 NA other upstream 1266427 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 1388407 4183875 ~ 4251594 (+)
AMCG00012641 NA other upstream 4058613 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 4800735 778908 ~ 839266 (+)
AMCG00012718 NA other downstream 161219 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 406521 6053148 ~ 6056832 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 829622 6476249 ~ 6517983 (+)
AMCG00012763 NA other downstream 1697823 7344450 ~ 7381559 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 2078861 7725488 ~ 7727828 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013315 endouc coding NC_007129.7 CM002902.2 15459318 ~ 15467446 (-)