AMCG00012729


Basic Information

Item Value
gene id AMCG00012729
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6032753 ~ 6039590 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012729
ATGGGTGCCAACGCGACTGAGATCGCACGAATCCTGGAGCAGTGCCCAGAAGCTGTGCTGTGTACTCCTGCACAAGTCAATGCCCAGAAAGAGCTGTGGAAGTCTGTATGCCCTAATGAGAAAGCACTGGTGAGAATAATTGAGAAATTCCCCCATTCTTTCTTCACAATTGGTCACCATGCCAACCAGAAAGCCAACATTGAGTATTTCCAAAGATTGAACTTTGGCAAGAGGATCATCTGCAAACTTATGGCAAGCGCACCGCAGAGTTTCAGCATCCCAGTTGCGCTCAATCAGGGGATGATCAGCGCTTTGCTAGAAATGTATCTGAACCTCGGTGGAGAGGAAGCCAACATGAAAATTTGGTTGCAAAAACTTTTGAGCCAAAACCCATTTACTTTAATGAAGCCCCCCGAGACCATGAAGGAGAATGTAATGTTCCTCCAGCAAACTGGGTTTACCAATGCTGAACTCCTTTTGCTACTGTCTAAGCTTAGAGGATTTATCACTGAGCTTTCTCCCAGCAGAATGAAGGAGACCCTGACTTACTCCAAGGAGATGCTGCTATGCTCTGAGCAGGAGCTGAAGGAGCTGGTGTTAAAATGCCCTGCTCTCTTGTACTACTCAGTTCCAGTTTTAGCAGATCGCTTAAAAGGACTCCTAAACTCCGGTACAGAAGGCCTCAAACACCTGCACCGAACCACTTGCTCCTTACTGTTGGAGTTTCTGTACCTGTCTGTTCCTGACAAAATGGAAGTTATCCAAGGAGGTCAGTCTGACATGAAGACCGCTGTGCAGGAGTTGCTGGATTTCATGGAGAAACGGAGCCAGCAACAGCAGGAGGACAAGGCCATGCAGCCAGAGGAGGCAAAGCTCTCGCCGGTGCCCCGCTTCCAGCCTGGAGAAGAGGAAGTGCCTCTTCAACTGCAATCTTCCCCAACCACTGATTGCAAGGTCTGTCCAGTGTGA

Function

GO: NA

KEGG:

id description
K15031 MTERF; transcription termination factor, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012729 True 969 mRNA 0.49 2 6032753 6039590

Neighbor

gene id symbol gene type direction distance location
AMCG00012720 NA coding upstream 241268 5767206 ~ 5791485 (+)
AMCG00012721 rfx4,LOC106561413,LOC106573296 coding upstream 269606 5731990 ~ 5763147 (+)
AMCG00012725 polr3b coding upstream 307999 5695131 ~ 5724754 (+)
AMCG00012722 NA coding upstream 386126 5640001 ~ 5646627 (+)
AMCG00012717 NA coding upstream 401634 5630403 ~ 5631119 (+)
AMCG00012737 btbd11a,btbd11,LOC107757250,LOC107694300,LOC107592010 coding downstream 60991 6100581 ~ 6101610 (+)
AMCG00012741 btbd11,btbd11a,LOC106573291,LOC100703440 coding downstream 153670 6193260 ~ 6231290 (+)
AMCG00012740 LOC105905702 coding downstream 204317 6243907 ~ 6264794 (+)
AMCG00012738 NA coding downstream 226152 6265742 ~ 6269443 (+)
AMCG00012739 ube2na,ube2nb,ube2n,LOC105897570,LOC107658971,LOC107707098,LOC107555890 coding downstream 240710 6280300 ~ 6282779 (+)
G39382 NA non-coding upstream 109730 5922614 ~ 5923023 (+)
G39321 LOC100846954 non-coding upstream 384646 5647774 ~ 5648107 (+)
G39279 NA non-coding upstream 595591 5436833 ~ 5437162 (+)
G39193 NA non-coding upstream 958627 5037547 ~ 5074126 (+)
G39186 NA non-coding upstream 1076886 4949240 ~ 4955867 (+)
G39445 NA non-coding downstream 245344 6284934 ~ 6287936 (+)
G39490 LOC103376870 non-coding downstream 473058 6512648 ~ 6536393 (+)
G39538 NA non-coding downstream 722375 6761965 ~ 6762278 (+)
G39560 NA non-coding downstream 858407 6897997 ~ 6898230 (+)
G39586 NA non-coding downstream 1174155 7213745 ~ 7218459 (+)
AMCG00012718 NA other upstream 209238 5807846 ~ 5823515 (+)
G39297 NA other upstream 479986 5552417 ~ 5552767 (+)
G38954 NA other upstream 1659179 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 1781159 4183875 ~ 4251594 (+)
AMCG00012641 NA other upstream 4451365 1394839 ~ 1581388 (+)
AMCG00012734 NA other downstream 13558 6053148 ~ 6056832 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 436659 6476249 ~ 6517983 (+)
AMCG00012763 NA other downstream 1304860 7344450 ~ 7381559 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 1685898 7725488 ~ 7727828 (+)
G39709 LOC101154678 other downstream 1795756 7835346 ~ 7836214 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013309 mterf2 coding NC_007129.7 CM002902.2 15147931 ~ 15155962 (-)