G39490 (LOC103376870)


Basic Information

Item Value
gene id G39490
gene name LOC103376870
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6512648 ~ 6536393 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU49225
ctgtgtgtgtgtttgtgtgtgtatatatatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcatttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagcgtggcatggttgttggtgccagacgggccggtctgagtatttcacaatctgctcagttactgggattttgacgcacaaccatttctagggtttacaaagaatggtgtgaaaagggaaaaacatccagtatgcggcagtcctgtgtgcgaaaatgccttgttgatgctagaggtcagaggagaatgggc

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49225 True 401 lncRNA 0.43 2 6512648 6536393

Neighbor

gene id symbol gene type direction distance location
AMCG00012749 asun coding upstream 58838 6438043 ~ 6453810 (+)
AMCG00012750 NA coding upstream 99902 6383805 ~ 6412746 (+)
AMCG00012739 ube2na,ube2nb,ube2n,LOC105897570,LOC107658971,LOC107707098,LOC107555890 coding upstream 229869 6280300 ~ 6282779 (+)
AMCG00012738 NA coding upstream 243205 6265742 ~ 6269443 (+)
AMCG00012740 LOC105905702 coding upstream 247854 6243907 ~ 6264794 (+)
AMCG00012747 NA coding downstream 8839 6545232 ~ 6579959 (+)
AMCG00012746 NA coding downstream 89601 6625994 ~ 6627816 (+)
AMCG00012753 NA coding downstream 106952 6643345 ~ 6759575 (+)
AMCG00012754 kras,rask,LOC103038241,LOC108428819,LOC105900436,LOC108274959 coding downstream 228686 6765079 ~ 6780818 (+)
AMCG00012755 NA coding downstream 247059 6783452 ~ 6795729 (+)
G39445 NA non-coding upstream 224712 6284934 ~ 6287936 (+)
G39382 NA non-coding upstream 589625 5922614 ~ 5923023 (+)
G39321 LOC100846954 non-coding upstream 864541 5647774 ~ 5648107 (+)
G39279 NA non-coding upstream 1075486 5436833 ~ 5437162 (+)
G39193 NA non-coding upstream 1438522 5037547 ~ 5074126 (+)
G39538 NA non-coding downstream 225572 6761965 ~ 6762278 (+)
G39560 NA non-coding downstream 361604 6897997 ~ 6898230 (+)
G39586 NA non-coding downstream 677352 7213745 ~ 7218459 (+)
G39668 NA non-coding downstream 1172474 7708867 ~ 7713243 (+)
G39669 NA non-coding downstream 1178104 7714497 ~ 7735268 (+)
AMCG00012734 NA other upstream 455816 6053148 ~ 6056832 (+)
AMCG00012718 NA other upstream 689133 5807846 ~ 5823515 (+)
G39297 NA other upstream 959881 5552417 ~ 5552767 (+)
G38954 NA other upstream 2139074 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 2261054 4183875 ~ 4251594 (+)
AMCG00012763 NA other downstream 808057 7344450 ~ 7381559 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 1189095 7725488 ~ 7727828 (+)
G39709 LOC101154678 other downstream 1298953 7835346 ~ 7836214 (+)
AMCG00012797 NA other downstream 1799505 8335898 ~ 8345855 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other downstream 1999840 8536233 ~ 8569891 (+)

Expression


Co-expression Network