AMCG00012749 (asun)


Basic Information

Item Value
gene id AMCG00012749
gene name asun
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6438043 ~ 6453810 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012749
CCGTAATCGGGGACGGACCAGAATGCTGTCTGGGGATGTTTTCCCCTGAGTTAAGatgcaataaaacatgattaaaatatattcttaatccgacagaatattaaaattacagcaTAGTTTCGTGGAATCATATGTCTGAAAATGACACTCGCAAGAAAAACTGGCTAAAAAGGAGAGAAATACTGCTGATGGTTGTCCTGGACTGGAGCTTCTCTGATGATGATAAATATTCTGTTCGTTTCCTAACACATCGGTCGTTTTTAAACCCAGACGTGTTGGTCTTTGGATTTGGTCGATCGATAAGacttactgttttattttgctgaagATGAAGACTTTTTCGGCATCTCACAAGACTGTGTTTGTGGTGGACCACTGCCCCTATATGGCCGAGTCATGCAGGCAGCAGGTGGAGTTCGACATGCTGACAAAGAACCGTTCACAGGGCATTATCCCCTTGGCCCCTGTCTCCAAATCCCTGTGGACCTGCGCGGTGGAGTGCTCTCTGGAATACTGCAGAATACTGTTCGATATCTACCCCACCAAGAAACTGGTGAATTACATTGTAAGTGACTCAGAGTTCCATATTCTGAACACCTGGAACCAGGAAGACCAGAATATACATGAGcTCATGTCAGCGCTGGCAGCTGTGGGGCCACCTAACCCCCGTGAGGACCCCGAGTGCTGCAGTATTCTGCACGGCCTGGTGCTAGCAGTAGAGGCACTGTGTAAGATCACAGAGTACCAGCACGAGGCTCGCACGTCCATGATGGACATGGCCGAGAGAGTCTGCAACCGCGGCCGGATCATCTGCATCACTAATGCTAAGAGTGACACCCATGTGCGAATGCTGGAGGACTGTGTACAGGAGACGatacaagagcaaaacaaactgGCCGCGGGGTCAGATAGGTTGATGCAGATCCAGCAGTGTGAGCTGGTCCTGATTCACACCTATCCCTCAGGGGACGACACTCTGGTCTCCGATCGTCCCAGGAAAGAGATTTCTCCCGTGTTGACCAGCGAAGTGCACAGTGTGCGCGCAGGACGGCACCTGGCCTCCAAGTTGAACATCCTGGTACAGCAGCACTTTGACCTGGcctccaccaccatcaccaaCATCCCCATGAAGGAAGAACAGCATGCAAACACATCTGCTAATTATGATGTTGAGTTACTTCACCACAAAGATGCACATTTGGAATTCATAAAGAGTGGGGATTTGCACCCTCCAGGCAGCAACAGTCGAGACAGCAGTCTCAAAGAAACTGTGACCTTAAAGTGGTGTACCCCACGCACCAACAGCGTGGagcTGCATTTTTGTACTGGGGCCTACCGGATTTCACCTGTGGATGTCAACAGCCGACCGTCCTCTTGTCTAACTAACTTTCTCTTGAATGGTCGGTCAGTGCTATTGGAGCAGCCGCGCAAGTCTGGCTCCAAAGTGATCAGTCACATGCTGAGCAGTCACGGGGGCGAGATCTTCCTCCATGTCCTGAGCAGCACCCGCTCCACTCTGGAGGACCCCCCCTCCATCAGCGAGGGCTGTGGGGGCCGGGTCACAGACTACAGGATCACCGACTTCGGAGAATTCATGAGGGAGAACCGCTTGACCCCTTTCCCCGAAACCGCCGAAAGTGCAGATGTGCTTGAGGGACTGCCCATTGAGAGGGCCAAAAACCAGCTGGAGAGGCACACACGCTACTGGCCTATGATCATCTCTCAGACCACGATCTTTAACATGCAGGCTGTGGTGCCCTTGGCTAATTTGATAGTAAAGGAGAGTTTGACAGAGGAAGACGTGCTTACTTGTCAAAAGACCATTTACAATTTGGTGGACATGGAGAGGAAGAATGACCCCCTTCCCATCTCAACCGTGGGCACGAGAGGAAAGGGACCCAAAAgAGACGAGCAGTACCGCATCATGTGGAACGAGCTGGAGACACTTGTGAGGACCCACGTGGGCAGCACGGACCGCCACCAGCGCGTCCTGGAGTGCATCGTTGCTTGTCGCAGCAAACCCCCCGAGGAAGAGGAGCGCAAGAAgcgagggaggaagagggaggataAGGAGGACAAATCCGAAAAGAACGGAAAGGACCTGGAGGCCGAGAAGAGCTGGCAAGAATCTGAAAGGTTAAAAGGGGTGCAGGACCGTGAGAAGGAGGAGCTGGCCGAAGCAGAAGTCATCAAGGACTCCCCCGACTCTCCTGAGCCACTCAACAAAAAACCCCGTCTGGTGGTGGAGGAAATCCAGCCAGTCGAAAAAGCCAAAGGTCCTGTCTCTTTGCTAACAATGTGGACCAACAGGATAAATGCTGCCAATTCCAGGAAGCACCAAGAGTTTGCTGGACGATTAAGCTCTGTAAACAACAAAGCTGAATTATACCAACATctcaaagaagaaaatggGATGGACACACACGAAAATGGGAAATCCTCGAGATAGTGACTTGTTACACGAGGAACACAGGATTAACTTTTATTATCCAAGACTCGCTACTTGAAACAGCCATCATACAGTTACACAGGACACAATTTTTAACCGAAATGACAATAATCCATTCACAGAGCCGGACTGGACTCCTCTCTCCCATcgctttttaatgtttatagaCTATATACAGATACGAGTTGTACCGTCTCCATCAAATTAAATCTTTGGCTTTTGTTTTCGATTTCAGAAAGACCCTTTTTTCcatgtctttctttttacataaagtgtgtttataaaaatgcttttggaGGTTTTTgacacaaaagaagaaaaaattaaataaacaatgtcaGTGGTTCCTTTGTTCCTGTTCATTTATCTCTTTACTATGCAGCACAATACAAGCCTCTCATATATCCCCTTACCTGGCAGTGGGCTGAGAGTACACAATGCTCTttaatttttgcatttttagtCTGG

Function

symbol description
asun Involved in several processes, including flagellated sperm motility; gamete generation; and posterior mRNA localization involved in anterior/posterior axis specification. Located in cytoplasm and nucleus. Part of integrator complex. Is expressed in follicle cell; nurse cell; oocyte; ovary; and testis. Orthologous to human INTS13 (integrator complex subunit 13).

NR:

description
PREDICTED: protein asunder homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012749 True 2917 mRNA 0.49 17 6438043 6453810

Neighbor

gene id symbol gene type direction distance location
AMCG00012750 NA coding upstream 25297 6383805 ~ 6412746 (+)
AMCG00012739 ube2na,ube2nb,ube2n,LOC105897570,LOC107658971,LOC107707098,LOC107555890 coding upstream 155264 6280300 ~ 6282779 (+)
AMCG00012738 NA coding upstream 168600 6265742 ~ 6269443 (+)
AMCG00012740 LOC105905702 coding upstream 173249 6243907 ~ 6264794 (+)
AMCG00012741 btbd11,btbd11a,LOC106573291,LOC100703440 coding upstream 206753 6193260 ~ 6231290 (+)
AMCG00012747 NA coding downstream 91422 6545232 ~ 6579959 (+)
AMCG00012746 NA coding downstream 172184 6625994 ~ 6627816 (+)
AMCG00012753 NA coding downstream 189535 6643345 ~ 6759575 (+)
AMCG00012754 kras,rask,LOC103038241,LOC108428819,LOC105900436,LOC108274959 coding downstream 311269 6765079 ~ 6780818 (+)
AMCG00012755 NA coding downstream 329642 6783452 ~ 6795729 (+)
G39445 NA non-coding upstream 150107 6284934 ~ 6287936 (+)
G39382 NA non-coding upstream 515020 5922614 ~ 5923023 (+)
G39321 LOC100846954 non-coding upstream 789936 5647774 ~ 5648107 (+)
G39279 NA non-coding upstream 1000881 5436833 ~ 5437162 (+)
G39193 NA non-coding upstream 1363917 5037547 ~ 5074126 (+)
G39490 LOC103376870 non-coding downstream 58838 6512648 ~ 6536393 (+)
G39538 NA non-coding downstream 308155 6761965 ~ 6762278 (+)
G39560 NA non-coding downstream 444187 6897997 ~ 6898230 (+)
G39586 NA non-coding downstream 759935 7213745 ~ 7218459 (+)
G39668 NA non-coding downstream 1255057 7708867 ~ 7713243 (+)
AMCG00012734 NA other upstream 381211 6053148 ~ 6056832 (+)
AMCG00012718 NA other upstream 614528 5807846 ~ 5823515 (+)
G39297 NA other upstream 885276 5552417 ~ 5552767 (+)
G38954 NA other upstream 2064469 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 2186449 4183875 ~ 4251594 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 22439 6476249 ~ 6517983 (+)
AMCG00012763 NA other downstream 890640 7344450 ~ 7381559 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 1271678 7725488 ~ 7727828 (+)
G39709 LOC101154678 other downstream 1381536 7835346 ~ 7836214 (+)
AMCG00012797 NA other downstream 1882088 8335898 ~ 8345855 (+)

Expression


Co-expression Network