AMCG00012750


Basic Information

Item Value
gene id AMCG00012750
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6383805 ~ 6412746 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012750
TGTATGCGGGGCTGTCATTTACCAAGCGGGCTTGGTCAAGTGTTCCCGAGGAACGGAATAAGGAAtaaagtttttcattttgttttacgttttatttttcaacacaaaAGGGGGACACTTCCGCAACATGCTCAGACGAATATTGCAGCGGACTCCGGGCAAAGGAGGTTCGCAGAGCTCGGACCCAGACCAGCCTGCTGCTGATGTAAACAATGAGGAATCCTCTGAGGGTTTTATCTGTCCCCAGTGCATGAAGTCGCATGTCTCAGCTGAAGAGCTTTTCAAGCACTATGAAGCGGTCCATGAATCTGGCAATCAGTCTGGTCATGGAGGCATAACCAACCAGTCTCCAGGAAGGGAGGATTTAGCACACCTCCGCCAAGAAGTGCAGGATCTCCAAGCCTCACTTAAGGAGGAGCGCTGGTTTTCTGAAGAGCTGAAGAAAGAGCTGGAAAAAGTTCAAGGGCAGCTGAAGCAAAGTCCACAGCCCGATGGAGTTGCAAGTGCAGAATCATCAGAGCTGCAGTCGCTGGAACTCAAGCTGCAAGAGGCAGAGATGGAAAAGTTCAACATTAAGCAGATGAAAGATTTGTTTGAGCAGAAAGCTGCACAGCTGGCAACAGAGATAGTAGACATCAAGTCCAAATATGACGAGGAGAAAAGTCTGCGGGAAGCGTTGGAGCAGAAAGTGAGTAGCCTGACCCAGGACAtgcagaaggagagagaagagaaagagaggctcCACACTGAACTGCTCCAGCGGCCAGGAGTGGAGGACGTGGAAGTGCTGAAGAAAGAGCTGATCCAAGTGCAGACGCTGATGGACAACATGACACGCGAGAGAGAAGATGAGTCGGAGCGCCTCAAGAGCCAATACAAGCAGCTGCAGGCGGACTTCACTACTTCAGAGACGACGGTGTCGCAATTGAGGGCTGAGCTGGAGAAAGGACCTCAGGAAGTAGCTGTGTACTCCCAGCAACTGCACAAACTGCAGAGCTCTCTGAACGGACTGCAGCAGCAAAACCAGACTCTGACAGAGAAGCTGTCCAAGAAAGACAAGGAGTACCAGGAGCTGGACGAGCGGCTTGGCACAGAGCTGGCCAGTAAGAAGAGCCTGCAGACCAGCCTCCACCAGAAAGAGCTGGACTGCCAGCAGATCCAGGCTCAGGCTGCTTCCACGGAGACCTCCCTCCATAGGGCCCAGGCGGAGCTCAGCGAGAGGGCAGAGGCGGGCCTCAAGCTGAAGCAGGAGCTGTCCGAGCTGGAGGTCAAACACCAGCAGCTCAAGGCTGAGTTCaagcagctccagcagcagagagaggagaaggaacAGCAGGGTCTCCAACAGCAGAGCGAGATAAACCAGCTCCATGCCAAGCTGCTGGAGACTGAACGGCAACTGGGGGAGGTGCAGGGCCGGCTGAAGGAGCAGCGACAGCTTTCTGGGGAGAAGCTGAAGGACCGGGAACAGCAGGTGGCTGATCTCCAGCTCAGGCTATCCCGGGCAGAGGAGCAGTTGAAGGAAAATGCAGCAAAATCAACCGACTTGCAGCACCAGCTGGAAAAGGCTAGGCAGCAACACCAGGAGGTGCAGGCTCTCCAACAGACGACCAATGCCAAGCTGAGGGAAGCTCAGAATGATCTGGAGCAAGTGTTGCGTCAGATTGGCGACAAAGACCAGAAGATCCAGAACCTAGAAGCGCTGCTGCAGAAGAGCAAGGACAACATCAGCCAGCTGGAAGCCGAGAGAGAGGACCTGTGTGCCAAAATCCAGGCAGGGGAAGGGGAGACAGCTGTGCTCAACCAGTTGCAGGAGAAGAACCATGCATTGCAAGAGCAGGTCACCCAGTTGACGGATAAGCTGAAGAATCAGTCTGAGAGCCACAAGCAGGCCCAGGAGAACCTTCATGAGCAGGTGCAGGAGCAGAAGATCCACTTGCGCTCTGCCCAGGACCGCTGCCTCTCACTGGAGGCCTCCATCACGGAACTCAACGCTCAGCTGACCGAGAGCAAGGAGAAGGTGGCCCAGCTCGATACCCAGCTGAAGGCAAAGACGGAGCTGCTGCTGTCCGCTGAAGCTGCCAAGACAGCCCAGAGAGCAGACCTGCAGAATCACCTGGACACAGCACAGCATGCACTACAGGACAAGCAACAGGAGCTGACCAAAAGCAAGGCACAGCTGGAGGAGCTGGGTGCCAAGCTCCAGGACAAGCAGGAGTTCTGTGGTCAACTGGAGGGCAGCCTGAAGGAGTGCAAGGACAAGCTGCTGCAGTCGGAGCAGAAGGTGGAGCAGCTGGAGTGCCTGGTTAAGAAGCTGGAGGTGGACCTGCAGGATGTGAAGGCCAGCAGGGAGCAGACCCAGCAGGACCTGCAGAGACAGAAGCAGCAGTGGGTGGAAGCTGATGGGAGAGTTAAGGAGCTCAGCAAACAGCTAGACTCAGAGAAAAAGGGGATAGTGGCTCTCGAGGAAGAGCACCGGAAGAAGTCCAGTGCTCTGGAAGATATGAAACAGCAGCTGAGCAAGCACGAGGAGGAGCGGACCAGCCAGAAACACATCCTGGAGAAACTCACCCAGGAGTCGACGGCACGGCAGGCCGAGCTCGAGAGCAAGTCACAGGCCTTGACGGGAAGCCTGCAGAAAACCCAACAGGAGAAGGAGTCCCTGTCCAAAGAACTAGCGACTGTGAGGGAGAACCTGTCCAAAGCCTCGCAGTCCCTAAAGGAGATGCAGACgcagctggagaaggagagagtgagcGTCAAGGCCTCTTTGGGTGAAAAGGAAAAATCTCATCAACAAGTGAAACAGGAACTCGAGAAGAAGGCTGAGAGTGCTGCTAGAGAAGTAAACGAGGTGAAAAGCCTGCTGCAAAAGAAGGAAGAGACCGAGAAAGGCCTGAAGTCCCAGCTGACGTCGGTGGCTGCACAGCTCTCGCAGACACAGGAGGCTCTAAGACAGAAGGAGAAGGAcgagcagcagctgcaggggaaGCTGAAGTCGGCCCAGGAGTCCTTCACCCAGGAGGTCAAGAAGCTGGAGACACAGTTCACTGACCTGCAGGTCCTCCATTCCCAGAAGGCAAGTGGACCTGTCGAGGCAGAAGAAAAACTGAAGGAACAGTTAGCAGCATTGTCGAAAGAGCTGAGCACAGAGAAGAACAAGAGTGCCGACCTGCAGAAGAGCCATGGCAAAACGACGGAGGACCTTGCCAAACTGCAGTCCGATTTCTACGGGAAAGAATCTGAGCTTTCTGCCATCAGGCAAGACCTCAAGGCCTCGGAGGACAAGCTGGCTCTTGCTCAGGAAGAGGTAGTTGCCAACAGGAACCAGCTCAGCAGCCACGGTGAGTTGATCCAGGAGCTGAGAGCTGGGAAGAAGGCCCTGGAGCAGGAAATAATGGAGAGGGGCGAGCAGCTCAAGCAGCAGGAGGAAGCTCTGCAAGGTGCTCAGAAACAAAAGGTTCTGACAGAGGAGGTGTTGAAGAAGGAGAAATCCAAAACTGCCGAGGTGAGTGAACTAAAGTCCAAATTGGAGAAGGAAGTGAACAGGCTGAGCGAGGAACTGAAGGCCTGCAGAGACCAGTTTGAAAAGGACCTGACAGACCTGCGCGATGCCAAGCAGCTGCTGATCCAGCAGAAGTTGGAGTCGCAGGGGCAGGTGGACAGTTTGAAGACGGCGCTGGAGCAGGAGAAGAAGGAGCACCAGTCCACCAGGGATGGTCTGAGTCACAGAGAGGAGGCGcagaagagtgagagagagcagatAGAGGCCAAGCTGAGTGCCGAGCTGCAGTCTAAAGAGGAGCAGAAGAAGAGGCACGAGGAGGCTGAGGCCAAGCTGAACATGCAGATCACAGCCCTCAACGAGAACCTGGGCACGCTAAAGAAGGAGTGGCAGAGCAGCCAGCGGCGGGTGGGCGAGCTGGAGAAGCAGACGGACGATCTACGGGGGGAGATCGCCGTGCTGGAGGCCACGGTGCAGAACAACCAGGACGAGAGGAGGGCGCTGCTGGAGAGGTGTTTGAAGAGCGAGGGGGAAATTGAAAAGCTTCAGGCCAAAGGGTTGGAAATACGGAGGAAGTTGGACGACACTACAGCGGCAATGCAGGAGCTGGGCAGAGAGAACCAGTCACTACAGATTAAACACTCGCAAGCACTCACTCGCAAATGGGCCGAGGACAATGAAGTGCAGAACTGTATGGCCTGTGGGAAAGGGTTTTCAGTAACAGTCAGGAAGCACCACTGTCGGCACTGCGGGAATATCTTCTGCGCTGAATGTTCTGCCAGGAATGCCTTAACGCCATCGTCGAAGAAGCCCGTGCGAGTCTGTGACACATGCTTCGATGAGCTGCAGGGATGAGAAGGCCGGGAGATCGCCCTCGGAGAATCCGcgacattttattattttatacatgcgTTTGTATGTACTttgaggagggaaaaaaaaaaaaaataacttgctaTTCCATTTTAACACTGATTGCTGTATTTTATAGAGAAATTGGCATAGGATCACAGGGACTAAAGTTTCATTGCAGTTCATTCTCATTCTGCTGTTCTGCGTTTGGAAGGTCACTGTGCTTAGGAGCATTGGAGCCGGGTTTATTTGGCACTGCCAGCCTCAATGAAGCGTTTGTAATGCAAGGATGGATGGCATCAAGCAAAGGGGAGGATATAATCTATATAGTGCCTTTATTGCTGATGCAGCCATATCAACTTAGGACTGTATAATAGAGAAGAAAGGAATTGTTAGAACaacagttttaacattttgatttctgaaACAGATGGTTTTATTACAGAAGAACCAGATCAAAATATATATCCCTTCAAATGTGTTCATACCCTTAACCAAGTGTGACTAAACATTAATTCCCCAGTAtgtttatacaatataatatacaaagcATGTTTGACTGTCAATACCatatacacacagctctggaaaaaattgagaccactccaagtgtgtgtgtgtatatatgtgtatatatatatatatatata

Function

GO: NA

KEGG:

id description
K12478 EEA1; early endosome antigen 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012750 True 5007 mRNA 0.53 29 6383805 6412746

Neighbor

gene id symbol gene type direction distance location
AMCG00012739 ube2na,ube2nb,ube2n,LOC105897570,LOC107658971,LOC107707098,LOC107555890 coding upstream 101026 6280300 ~ 6282779 (+)
AMCG00012738 NA coding upstream 114362 6265742 ~ 6269443 (+)
AMCG00012740 LOC105905702 coding upstream 119011 6243907 ~ 6264794 (+)
AMCG00012741 btbd11,btbd11a,LOC106573291,LOC100703440 coding upstream 152515 6193260 ~ 6231290 (+)
AMCG00012737 btbd11a,btbd11,LOC107757250,LOC107694300,LOC107592010 coding upstream 282195 6100581 ~ 6101610 (+)
AMCG00012749 asun coding downstream 25297 6438043 ~ 6453810 (+)
AMCG00012747 NA coding downstream 132486 6545232 ~ 6579959 (+)
AMCG00012746 NA coding downstream 213248 6625994 ~ 6627816 (+)
AMCG00012753 NA coding downstream 230599 6643345 ~ 6759575 (+)
AMCG00012754 kras,rask,LOC103038241,LOC108428819,LOC105900436,LOC108274959 coding downstream 352333 6765079 ~ 6780818 (+)
G39445 NA non-coding upstream 95869 6284934 ~ 6287936 (+)
G39382 NA non-coding upstream 460782 5922614 ~ 5923023 (+)
G39321 LOC100846954 non-coding upstream 735698 5647774 ~ 5648107 (+)
G39279 NA non-coding upstream 946643 5436833 ~ 5437162 (+)
G39193 NA non-coding upstream 1309679 5037547 ~ 5074126 (+)
G39490 LOC103376870 non-coding downstream 99902 6512648 ~ 6536393 (+)
G39538 NA non-coding downstream 349219 6761965 ~ 6762278 (+)
G39560 NA non-coding downstream 485251 6897997 ~ 6898230 (+)
G39586 NA non-coding downstream 800999 7213745 ~ 7218459 (+)
G39668 NA non-coding downstream 1296121 7708867 ~ 7713243 (+)
AMCG00012734 NA other upstream 326973 6053148 ~ 6056832 (+)
AMCG00012718 NA other upstream 560290 5807846 ~ 5823515 (+)
G39297 NA other upstream 831038 5552417 ~ 5552767 (+)
G38954 NA other upstream 2010231 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 2132211 4183875 ~ 4251594 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 63503 6476249 ~ 6517983 (+)
AMCG00012763 NA other downstream 931704 7344450 ~ 7381559 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 1312742 7725488 ~ 7727828 (+)
G39709 LOC101154678 other downstream 1422600 7835346 ~ 7836214 (+)
AMCG00012797 NA other downstream 1923152 8335898 ~ 8345855 (+)

Expression


Co-expression Network