AMCG00012747


Basic Information

Item Value
gene id AMCG00012747
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6545232 ~ 6579959 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012747
ggcACCGTATTGAGGAAAATTCTTCTCACTCGGTACTTTGGCAGTCCACGCATTCATTCAAAAGTAGATTTTGGTAGTGGCAGCAGCAGCTCTTCTGGAAACTACTCGAAAACATCTTCAGGAGGTGGATCATCAGCACAAGATATAGACAAAGGGGCAACCTGTCTGACCGATATTCAGTGCCTGTTAGACAGCGTTGGGGCTTCTGAGCTGGTCATAGACCTCATCGTCAGCACCAAAAATGACCGCATCTTCCAAGAGAGCATTTTACTGGGGATTGCGTTACTGAAAGGaggaaacacacaaatacagAATTCGTTTTACCATCAGCTTCACGAACAGAAAAAGTCTGAGAAATTCTTCAAAGTGTTTTACGATCGCATGAAGCTGGCGCAGCAGGAGATCCGATCCACAGTTTCGGTGAATACCTATGATCTGAGCTGCAAGAAGAAAGACGATGACGGGGATGTGACCGCAACcaggcaaaagaaaaatgAAAAGGATTCTGTCCTTCATCTCAAGGATGAGATGAAGGGCCAGTTAAAAGAGGCCACTTCAGCCACATCCAAGGCATACTGTTTGTTCCGCAAGGAGATCGATCCTGACATCGATCTGATTGGCCAGGGCAGTGATGGGGGTGTGTCTGAGGATACATCAGATGAGGAGACGCTCATCAGCCCAGCGATTGCCATCATGGAACCCATTTTGCGcttcctgcagctgctgtgtgAAAACCACAACAGAGACCTACAGAATTTCCTGAGAAACCAGAACAATAAGACCAACTATAACCTGGTGTGCGAGACCCTGCAATTCCTGGACTGCATCTGTGGGAGCACCACTGGTGGCCTAGGTTTGCTTGGCCTCTACATCAATGAAAGAAATGTAGACCTGGTGAAGCAGACTCTGGAGACCATCACAGAGTACTGCCAGGGACCCTGCCATGAGAACCAGGTGCTGCACAAATCCTCTCAGACACTGACCCCTGTAACCTGTATTGCGAAACATGAATCTAATGGAATTGACATTATAATAGCACTTATTGTAAATCCCATCAATCCTCTTGGAAAGTATCGCATAGACCTTGTGCTTGAACTGAAGAACAATGCTTCCAAGCTACTACTTGCCATAATGGAAAGCCGACATGACAGCGAAAATGCTGAAAAGATCCTGTACAAAATGAGACCAAATGAACTGGTGGGCGTTATGAAAGATGCCTATATCCAAGGCCTAGAAAACGAGAATGAAGAGGACAGTTGGGGGGACCAGATTTTGCCAAAGGATGTTGGCCATAATATGTATATTCTGGCCCATCAGTTGGCTCGACACAATAAGATCCTGcagcagagtttaaaacctgGATCGGATTCCGATACCGAAGGAGACGAAGCTTTGAAATACTATGCTAAGCACACTGCCCAGATCGAGATTGTTCGTCATGACAGAACTATGGAGCAGATAGTGTTTCCTGTGCCTAATATTTGTGAATATCTGACGGAAGAATCCAAAATCCGTGTCTTCAACACAACTGAGAGAGATGACCAAGGCAGCAAGGTCAATGACTTCTTCCAGCAGACAGAAGATCTCTACAATGAGAtgaaatggcagaaaaaaatCAGAAATAATCCACCTCTGTTTTGGTTTTCCCGACACATTTCATTGTGGGGAAGCATTTCTTTCAATTTGGCCGTACTTCTTCTCAATAAGATTGTCTTTTTGGTCAGCTTCGTTGGCAACCGTGGCACATTCACCAGAGGCTATAAAGCTGTCATCATGGATATGGCATTTCTCTATCATGTCACTTATGTCATTGTCTGTATGCTTGGCCTCTTTGTCCATGAATTCTTCTACAGTTTTCTGCTCTTTGATCTGGTGTACAGAGAGGAGACACTGCTGAATGTCATCAAGAGCGTGACTCGCAATGGCCGCTCCATCATCCTCACCGCCGTGCTTGCTCTCATCCTGGTCTACCTCTTCTCCATCGTGGGCTTCCTCTTCCTCAAAGATGACTTCCGCATGGAGGTGGACAGGCTTCCCATGGCAGAGGGCGATGATGATGGGACGGAGCGCGTGTGTGATACTCTGCTGCTGTGCATCGTCACAGTGCTGAACCAGGGCCTCCGCAACGGTGGCGGAGTAGGGGACGTGCTGAGAAAACCTTCAAAGGATGAGCCCCTGTTTGCAGCCCGTGTGGTGTACGATCTGCTCTTCTTCTTCATCGTCATCATTATCGTGCTCAATCTCATCTTTGGTGTAATCATTGATACATTCGCTGACTTGAGGAGCGAGAAGCAGGGGAAGGAAGAAATTCTAAAGACGACATGTTTCATCTGTGGACTCGAGAGAGACAAATTCGACAACAAGACAGTTTCTTTTGAGGAGCACATAAAATCAGAACATAACATGTGGCATTACTTGTATTTCATCGTCCTGGTAAAAGTGAAAGACCCAACCGAATACACTGGCCCTGAAAGTTATGTTGCTCAAATGATCAAGaaATACCCAGATGGAAAATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012747 True 2517 mRNA 0.46 17 6545232 6579959

Neighbor

gene id symbol gene type direction distance location
AMCG00012749 asun coding upstream 91422 6438043 ~ 6453810 (+)
AMCG00012750 NA coding upstream 132486 6383805 ~ 6412746 (+)
AMCG00012739 ube2na,ube2nb,ube2n,LOC105897570,LOC107658971,LOC107707098,LOC107555890 coding upstream 262453 6280300 ~ 6282779 (+)
AMCG00012738 NA coding upstream 275789 6265742 ~ 6269443 (+)
AMCG00012740 LOC105905702 coding upstream 280438 6243907 ~ 6264794 (+)
AMCG00012746 NA coding downstream 46035 6625994 ~ 6627816 (+)
AMCG00012753 NA coding downstream 63386 6643345 ~ 6759575 (+)
AMCG00012754 kras,rask,LOC103038241,LOC108428819,LOC105900436,LOC108274959 coding downstream 185120 6765079 ~ 6780818 (+)
AMCG00012755 NA coding downstream 203493 6783452 ~ 6795729 (+)
AMCG00012756 etnk1,LOC106609326 coding downstream 243903 6823862 ~ 6843341 (+)
G39490 LOC103376870 non-coding upstream 8839 6512648 ~ 6536393 (+)
G39445 NA non-coding upstream 257296 6284934 ~ 6287936 (+)
G39382 NA non-coding upstream 622209 5922614 ~ 5923023 (+)
G39321 LOC100846954 non-coding upstream 897125 5647774 ~ 5648107 (+)
G39279 NA non-coding upstream 1108070 5436833 ~ 5437162 (+)
G39538 NA non-coding downstream 182006 6761965 ~ 6762278 (+)
G39560 NA non-coding downstream 318038 6897997 ~ 6898230 (+)
G39586 NA non-coding downstream 633786 7213745 ~ 7218459 (+)
G39668 NA non-coding downstream 1128908 7708867 ~ 7713243 (+)
G39669 NA non-coding downstream 1134538 7714497 ~ 7735268 (+)
AMCG00012748 itpr2,LOC100196824 other upstream 27249 6476249 ~ 6517983 (+)
AMCG00012734 NA other upstream 488400 6053148 ~ 6056832 (+)
AMCG00012718 NA other upstream 721717 5807846 ~ 5823515 (+)
G39297 NA other upstream 992465 5552417 ~ 5552767 (+)
G38954 NA other upstream 2171658 4370313 ~ 4373574 (+)
AMCG00012763 NA other downstream 764491 7344450 ~ 7381559 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 1145529 7725488 ~ 7727828 (+)
G39709 LOC101154678 other downstream 1255387 7835346 ~ 7836214 (+)
AMCG00012797 NA other downstream 1755939 8335898 ~ 8345855 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other downstream 1956274 8536233 ~ 8569891 (+)

Expression


Co-expression Network