AMCG00012753


Basic Information

Item Value
gene id AMCG00012753
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6643345 ~ 6759575 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012753
CACCTGGTCCGAGTCCTCTTCACAGGGCTCCGCTGGCAGCACAGTGACCTTGGTGCCAGTCTGCTGGATGAACTGCTGCAGGTTCACTTGCCTCAGCTCCTTCGTGAGCTGTTCGAGTTGCTGCTCCTTCTCCTGATGGATGAATTCAGAGCAAGACGATACATTACAGTTGAAAACAGGAAGAAAGGGACAGAAGCTGAGAAACATCAATATCggcaaatgttttcattactttttgGTGCTGCCAATAGTCTTTTGCTGGCCTGTCCGAGAGATCTCTCCACCGCTCGGCAGCTCGTCTCCAGCCTGGCTGTGTGCTGGGACTGGATATCCAGCTCTCCCTTTACTTTGAggatcttcatcttcatctcctcctcgtTGACTTGCTGCGTCTCTTGCATCTCCTGCTGGATCTTCTCGGCCTCGATGCCTGCCTCGATGCTGTGGATCTTGGCCCGGTACTCGGCCAGCTTGTCCTCGCACTGCTGGATTCGGTGCCTCATGTCCTGCAGCTGCTCCTTCAGCTGCTTCTCGTTCTCCTGCTCGATCTGCAGCTCGTTCTCCCAGAACTCCTCTTCCTCAATCTCCACTTCGTTCTTCTTCACCCGCTGCTCGAGCCGCATtatctcctcctccaggccgTTGCCGCTGGCATTCTTCTTCTCAGCCCAGAAGAGCAGCTCGGCCTCGTGGCTCTCCAACCTCCTCTCCAACACTTGTAACTTCTCCTTCTGCAGCTGCACCAGCCTGCTCAGTTCCTCAGTGCCCGGCCGGGGCAGGTTGTTGTTCAGCACCTTCTGCTTGGCCTCCGTCTCCTTGCTTTTCCCGAAGATGTCCATCAGTCCCTTTGCTCCTCCCGTGAAAGTCAACGATTTTCTCTTGGGCTCCTTGCGCTTCAGCAGTTTGTCATTTTGGGTCCTTAGCTTGGCCAGGGGTGGGAGGCTCTGCCGGTACAAAGTCCTCTCCGGGATACGGGCCATGCTGTCAGAGGTGGGCCTCTCGCTGAGCGACGGCCCTGTCCTCTTCAGGATCAGCTGCACGTCGCTGGCGTACTGCCCCCATTTATTCAGGGAGATGATGGGGTTCTCATGCGGAGCAAGGGTCAATCACGGCGTTTCCTTCAAAcTCATTTCCAATGTCTACAATTCGGCCTGTGGAAGAAGGATTTCACGAAACCAAAATGTACTGCACAGCAAACAGGAGAAGCATATGACACCATTAACATCCCTGTTCATCCTGCAAACTGCTTTCCATTATTCACATAAGGCCCTGTCCAAAAAAGCCTACAGTAATTTCGCCATGGAAAGAAagtatttacatacacacaagtACATCATAGCCTACACCTCTCAGCAGGAAGAAATGGGCTCTCTCAAACGTCTAGGGGAACAGAATGACAGGCAACATCCCGTTCCAAAATTCTTCCTTGACCCGTGCCACTCAAAGGAGAGCGCTTCACCGAACATCTGGTGTGGAGAAAGTGTCTCTGGTAAAGAAGCCAGACCTCTGAGTGAGAAATCCCAGCTGCAGGATCTCAATCACCACTGCAGTGACCCGGTCGGAGACGTGAAGTCTATGAGTGATCGGCTGGCGGATAGAATCAAGGAGCTGAACGGCTTCCTCTTTAATAAGGAATTAGAAGTGAGGAACTTACGCCTTCTTCTGGCCCAGAAAGACCAGGAGATGGAGACAAGGGCTGCCCTGTCACTCCTGTCAAGGTCAGAGGTAGACAAGAATGAACTTCTTGCATTCCTCCAGGAGACCCAGAACAGGTGTGAGGAGGAGCACTACCTGCGACTCCAGTTGGAAGAGGAGGTACAGGTCCTGAAGCACAGACTCGAGGTGCAGGAGACGAGCCTGTCACAGCTGGCTGGGCTACCACAGTACCCTACAGAGGTGGAAATGCAGGGGAGTGATGCAGGAGATGGCAATGGGGCACTGCTGGAACAAGTGGAGAAACTGACCGAGCAGGCTGCCTCTCTGGAAACTCAGCTCTTCTGTGCTGAGGCCAGTAACAGAGGGCTCATTGAGAGTTTGGACcagcagaggcagagagaccGGCAGAGAATCCATACCCTGGAGGCCAGACTACAGCTATCTGCGAAGAAAGGTCCTGAAGAGAATCTCAACAGCGCACTACAGGGAGAACCTCAGTCAGACCGTTCCTCCCCTGCTAGCCTGGTCCCCCACAACCAGACAGGACAGGCCCCCTCATCTGTGCCACTGGAGCTCCTGAGGCCTCACAGCGCTGCCCAGCCAGGACGGGCAGCTGAATTTGGAAAATCACAGCTTCCCCGGCGCCCTGTTTCCGTTCCCCCCTCCCTGGATGCTGACTTCTGGCTTCTCGGGGATGGCAGGGATTATTTCCGCAGGGGGTTTCAAGAGCTGAGGAGGGAAGCATTGCCATCTGGTGACCGCCAGAGGAAGAGCAGACCATCGACAGCACAGGAGTATTGCAATGCAACCTCAAGTGCTATAGGGAATATGAAAATAGCAGAAGTCCACTGTAGAGGCCTGTTTGTACGACTAGAGAACAGCTCAccgaaggaggaggaggaaatcGGGGGATACTTGCTGCAGCAAAACGTCAGGGGGCATCCGGTCTGGGCAGCTGCCTCCAGGGTCTCTCACCAACCTCCTGAGAATTTCCTGTGGAAGGAGCAGAACCGATTCGGCACCGGTCCAGAATGTACCACTATTCTGTGCAAACCGAATGGTCAGGCTGTGGCTTGGTACACACCTGTCCTTTGGAAAATGAAGTCACAGCCAGCTTTGAGGGAAGCTGAGGATCAGACCAGGACCGACTCGGCCCCGCTGACTGAGCAGGTGGACTGGGCTACAAAGAAGCTGGAAGGCGAGACTCAACAAGGGTCATCAGAGCAGCCCAGTCCCGAAGACAAACAAGAGCGTTCTTACAAGACAGAAGAAGAGACTTGTGTTCTACTGAAAAGGAAGAAGGATTTTCCAGTGGTTCTCTCGCCAACTCGCAGCCCCTGGGCCCAGAGTCCGAGCTGCTCCACACACCCAGATTACTCCCAGACCAGGCAGCTCTTGCCCAGAAGCCAGGGGACTAGTGTGTGCCGGCTCCCCAGGTCTCAGACAGCCAGGCCGCAAACAGCCACTGGGGGCAGTTCTGTCCGCagctccaggagagagagaggcatactgacagagggaggaaggagaggaCCAACGCGCTCAGCAGGAGGGAGCCTGGATACCCTCCGAGTCCTTCTCCCTGGGTCCTTCTTCTCCCCTGAAAAGCAGCACAGGGCGGGGCTTCAGCTGCTCCAATCAGCTCACAACCTGGCATTCCAGCCCTCGATGCCCCGCCCACCTCCTGTGGCATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012753 True 3351 mRNA 0.55 19 6643345 6759575

Neighbor

gene id symbol gene type direction distance location
AMCG00012746 NA coding upstream 15529 6625994 ~ 6627816 (+)
AMCG00012747 NA coding upstream 63386 6545232 ~ 6579959 (+)
AMCG00012749 asun coding upstream 189535 6438043 ~ 6453810 (+)
AMCG00012750 NA coding upstream 230599 6383805 ~ 6412746 (+)
AMCG00012739 ube2na,ube2nb,ube2n,LOC105897570,LOC107658971,LOC107707098,LOC107555890 coding upstream 360566 6280300 ~ 6282779 (+)
AMCG00012754 kras,rask,LOC103038241,LOC108428819,LOC105900436,LOC108274959 coding downstream 5504 6765079 ~ 6780818 (+)
AMCG00012755 NA coding downstream 23877 6783452 ~ 6795729 (+)
AMCG00012756 etnk1,LOC106609326 coding downstream 64287 6823862 ~ 6843341 (+)
AMCG00012762 NA coding downstream 487587 7247162 ~ 7279658 (+)
AMCG00012761 lyrm5a,LOC106576136,LOC107658915,LOC107725960 coding downstream 531276 7290851 ~ 7292904 (+)
G39490 LOC103376870 non-coding upstream 106952 6512648 ~ 6536393 (+)
G39445 NA non-coding upstream 355409 6284934 ~ 6287936 (+)
G39382 NA non-coding upstream 720322 5922614 ~ 5923023 (+)
G39321 LOC100846954 non-coding upstream 995238 5647774 ~ 5648107 (+)
G39279 NA non-coding upstream 1206183 5436833 ~ 5437162 (+)
G39538 NA non-coding downstream 2390 6761965 ~ 6762278 (+)
G39560 NA non-coding downstream 138422 6897997 ~ 6898230 (+)
G39586 NA non-coding downstream 454170 7213745 ~ 7218459 (+)
G39668 NA non-coding downstream 949292 7708867 ~ 7713243 (+)
G39669 NA non-coding downstream 954922 7714497 ~ 7735268 (+)
AMCG00012748 itpr2,LOC100196824 other upstream 125362 6476249 ~ 6517983 (+)
AMCG00012734 NA other upstream 586513 6053148 ~ 6056832 (+)
AMCG00012718 NA other upstream 819830 5807846 ~ 5823515 (+)
G39297 NA other upstream 1090578 5552417 ~ 5552767 (+)
G38954 NA other upstream 2269771 4370313 ~ 4373574 (+)
AMCG00012763 NA other downstream 584875 7344450 ~ 7381559 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 965913 7725488 ~ 7727828 (+)
G39709 LOC101154678 other downstream 1075771 7835346 ~ 7836214 (+)
AMCG00012797 NA other downstream 1576323 8335898 ~ 8345855 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other downstream 1776658 8536233 ~ 8569891 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024209 rassf8a coding NC_007136.7 CM002909.2 31122806 ~ 31162816 (+)