AMCG00013541 (paf1)


Basic Information

Item Value
gene id AMCG00013541
gene name paf1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35129171 ~ 35136494 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013541
GGAGGATATTTAACAGAGTGCGTCTTCGTGTGGTATTGTGAATTCGCCGCAAAGATGGCCCCAACCATCCAAACTCAAACCCAACGCGAAGATGGGCACAGGAGTAGCTCCCACAGAACTGTCCCAGAAAGGTCTGGAGTCGTCTGCCGTGTGAAATACTGCAACAGCCTCCCTGACATCCCATTCGATCCCAAGTTCATCACCTACCCTTTCGATCAACACAGGTTTGTGCAGTACAAGGCCACGTCACTGGAGaagcaacacaaacatgaaCTGCTCACTGAGCCTGACCTGGGGGTCACCATTGACCTCATCAACCCAGACACCTACCGGATAGACCCTAGCATTATGTTGGACCCAGCAGATGAAAAATTACTAGAAGAAGATATCCAGGCTCCGTCCAGCTCAAAACGATCCCAGCAACATGCTAAGGTGGTTCCTTGGATGAGGAAGACTGAGTATATCTCCACAGAATTCAACAGATATGGTGTATCAAATGAGAAAGTGGAAGTCAAGATCGGGATTGCCCAGCATTACAGCAAACCCAGGGTCACACCAGTGGAGATCCTACCTGTGTTTCCTGACTTCAAGATGTGGATTAACCCCTGCGCTCAAGTCATCTTTGACTCGGACCCAGCTCCCAAAGATATCTCTGGTCCTGCTGGTGTGGAAATGATGTCCCAGGCTATGATCAGGGGTATGATGGATGAGGAGGGCAATCAGTTTGTGGCCTACTTCCTGCCCAACGAGGACACCATGGGAAAACGCAAGAGAGACTTTGAGGAGGAATTGGATTACAGACCTGAGGAAGTGTACGATTACAAGATAGCAAGGGAGTACAACTGGAACGTGAAGAACAAGGCCAGCAAAGGCTACGAGGAGAACTACTTCTTCATCTTCAGGGATGGAGATGGAGTCTATTACAACGAGCTGGAGACCAGAGTGCGGCTGAGTAAGAGGAGAGCCAAGGCCGGAGCCCAGTCTACTACCAACGCTGTGCTGGTGGTCAAGCACAGAGACATGAACGAGAAGGAGCTGGAGGCTCAGGAAGCCCGCAAAGCTCAGCTGGAGAACCATGAACCAGAAGATGAGGAAGACATCGATCTGGACAAGGACATGGACATGGACATGGACATGGACATGCCCGACTCTGGCGATGACAAGGAGAAGGGCAGCGAGAGCGAGGGAGAGCACTCAGGCAGCGAGAGTGACCGTGacgatgaggaggaggaggaagaggaggaggaggacgcaagggaaggaaggaagaggaggaggcaggcggaggaggaggaagaggaagaagcaGCGAAGCCACGGAAGAGGAAGGCCAGCGGCAGCGGCAGCGACAGCGACAGCGGGGACGACCGGCAGGCCAGGGAAGCCAGGGACGAGGAGGAGATCTTCGGCAGCGACGACGACAGTGACGAGGACGACGACGAGGCGGACACCAAGAATGACAACCGGAGCAGCGgcagcgaggaggaggaggaggaagacgacgaggaggaggaaggaggggCAGGAGGGCGCAGGAGCCGCAGTCCCTCCCCAGCCCACAGCAGCAGCGAGCACTCGGAGGGGGAGCAGCACAGCGGCAGCGGGAGTGAGCAGGCCTCGGACTCCAGCGAGGGCAGTGACAGCGACTGAGCGCACGCGTGTGGCCCCGCAGGCCCCGCTGCCACACCGGGGCCCTAGACCGCGCCCGCCCTGCAGTGCTGCTACTCAGGCAGTGAACCGCTCCCTGGGATGTGCAGTCTTGTTTTTCGAAGGTCCAGCACGGAGGCTCGTCTGTGATCAGTGCAAATGTCAGGAAGATAATCTGTCTTCATATGTatataccttttttttgtttttgtcttctgttgGTAGCAAGTGGTACATACTAGACAGCGTTCTCAGAATCAGTTCCCAGTGGCTGTTAGTtttttatggggggggggggtttaacTGAATAGTGAGACGTTATCCCTCATTGCCATCTCTCTCCGTCCAGtgttggattaaaaaaaactttgttatACGTTTTCTATTATTCCATTTAGTTTTTGGGCAGAAATGCAGAAACTGCCAGTGTAATTAACAGCTGGGAATTGTTCAGAAATGCCAGAGACAATCTGACAGTTCTTTGACTCGCAATACGtgatacatttcagtaaaacccaatctttttttatttaggaGTTTGGTTGATTTTATATAGCATCTATAGAAGTAAATGCTTTTCAGTAGGCTTCAAACTAAAGAGGTAGTTTGTTTAGCAAAAAAGCAGTATACTTGATTTAAACTTGTAAATATGCTGTTACATAAACTTTGTGAATAAAGGGTCAATTTATACCCTATTTGGGGTGCAATTCCCCAGGTGTAATGTGTAATTGAGATCTTCTGAtgcttaaataataaaagtagacCCGTCATCTTTTGTCACACCTACATAATTTATTGattcttacttttattttctattttcgtTGAATGGAGAAACCTCTACACCCTAGGAGAAGTTGGAATTTTCTGCATGCAAATAGCATATTGAATGCTCTGTTAACCCATCTGCAAacatgtattcaaataaatattcctTAGTCCTGGTATTTGCACTGGGAAATATTTGAGAACAATTTTTGGATGATTGAATGTAG

Function

symbol description
paf1 Predicted to enable RNA polymerase II complex binding activity and chromatin binding activity. Involved in heart development. Located in nucleus. Part of Cdc73/Paf1 complex. Orthologous to human PAF1 (PAF1 homolog, Paf1/RNA polymerase II complex component).

NR:

description
PREDICTED: RNA polymerase II-associated factor 1 homolog

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0016593 Cdc73/Paf1 complex cellular_component
GO:0000993 RNA polymerase II complex binding molecular_function

KEGG:

id description
K15174 PAF1; RNA polymerase II-associated factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013541 True 2642 mRNA 0.49 14 35129171 35136494

Neighbor

gene id symbol gene type direction distance location
AMCG00013542 samd4b coding downstream 23337 35081511 ~ 35105834 (-)
AMCG00013537 LOC108246317 coding downstream 61240 35066249 ~ 35067931 (-)
AMCG00013536 NA coding downstream 71736 35055617 ~ 35057435 (-)
AMCG00013538 NA coding downstream 137056 34991882 ~ 34992115 (-)
AMCG00013535 NA coding downstream 480468 34544077 ~ 34648703 (-)
AMCG00013544 NA coding upstream 120035 35256529 ~ 35261313 (-)
AMCG00013547 trappc6a,LOC106580727 coding upstream 149852 35286346 ~ 35306459 (-)
AMCG00013548 NA coding upstream 178170 35314664 ~ 35318941 (-)
AMCG00013550 NA coding upstream 688511 35825005 ~ 35826534 (-)
AMCG00013551 NA coding upstream 750802 35887296 ~ 35887799 (-)
G45136 NA non-coding downstream 3594 35123355 ~ 35125577 (-)
G45123 NA non-coding downstream 11247 35105887 ~ 35117924 (-)
G45121 NA non-coding downstream 46832 35070738 ~ 35082339 (-)
G45102 NA non-coding downstream 156465 34972482 ~ 34972706 (-)
G45099 NA non-coding downstream 196806 34931983 ~ 34932365 (-)
G45145 NA non-coding upstream 77757 35214251 ~ 35214565 (-)
G45187 NA non-coding upstream 143063 35279557 ~ 35279821 (-)
G45201 NA non-coding upstream 213471 35349965 ~ 35350164 (-)
G45210 LOC107575789 non-coding upstream 518791 35655285 ~ 35659856 (-)
G45248 NA non-coding upstream 698657 35835151 ~ 35932634 (-)
AMCG00013531 NA other downstream 1429459 33692844 ~ 33699712 (-)
G45037 NA other downstream 1450264 33678224 ~ 33678907 (-)
AMCG00013518 NA other downstream 1627424 33468849 ~ 33501747 (-)
AMCG00013488 NA other downstream 2501267 32622153 ~ 32627904 (-)
G44719 NA other downstream 2561219 32565760 ~ 32567952 (-)
AMCG00013578 NA other upstream 1742699 36879193 ~ 36885493 (-)
G45468 NA other upstream 1822683 36959177 ~ 36959914 (-)
G45571 NA other upstream 1994364 37130858 ~ 37223824 (-)
G45614 supt5h other upstream 2346422 37482916 ~ 37483608 (-)
G45617 LOC100846954 other upstream 2352235 37488729 ~ 37538310 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008847 paf1 coding NC_007126.7 CM002899.2 47618221 ~ 47623452 (+)
grasscarp (Ctenopharyngodon idella) CI01000468_00000504_00006254 PAF1 coding CI01000468 null 504 ~ 6279 (+)