AMCG00013840 (LOC104957825,LOC107725284)


Basic Information

Item Value
gene id AMCG00013840
gene name LOC104957825,LOC107725284
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44933300 ~ 44940161 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013840
ATGTTTCCCCTCGGTGTGACGGGGAAGTCGAAAGCTGTTGAGGGCGGGCAGTTGGCTGGTCTCAAAATACCAGaggAGGACGTGGAGAACTTCGACGTTGCAGCCCTGCCCCTGGACACGCAGAGGAACATCGAGGCCGACAGCTTCTGGTGCATGAGCAAACTGCTGGACGGCATCCAGGATAACTACACCTTCGCACAGCCAGGCATCCAGATCAAGGTGAAGGCCCTGGAGGAGCTGGTGAGCAGAATCGATGAGGATATCCACAACCACTTCCAAAAGTACGAGGTTGAGTACCTGCAGTTTGCCTTCCGCTGGATGAACAACCTGCTGATGAGGGAGCTGCCCCTTCGCTGCACCATCCGGCTATGGGACACCTACCAGGACCGGAGAACTGGAAGAGAGAGTCGGATCGTGCCGAGGCTTCACCTTCCCGTTATCTCCAGTGTTCACAGCTGGTTCCCGGTCATCAGATGCACCCCCGCGGCCGAGAACAAATGA

Function

NR:

description
PREDICTED: TBC1 domain family member 22B-like, partial

GO: NA

KEGG:

id description
K20360 TBC1D22, GYP1; TBC1 domain family member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013840 True 501 mRNA 0.57 5 44933300 44940161

Neighbor

gene id symbol gene type direction distance location
AMCG00013839 NA coding upstream 14039 44901032 ~ 44919261 (+)
AMCG00013837 NA coding upstream 236529 44695779 ~ 44696771 (+)
AMCG00013834 NA coding upstream 271662 44635479 ~ 44661638 (+)
AMCG00013833 kcnd3,LOC101073956,LOC102776651,LOC102303593 coding upstream 402473 44529718 ~ 44530827 (+)
AMCG00013829 NA coding upstream 712110 44203414 ~ 44221190 (+)
AMCG00013841 LOC101476397 coding downstream 406446 45346607 ~ 45353929 (+)
AMCG00013849 kif21b coding downstream 479752 45419913 ~ 45431617 (+)
AMCG00013848 LOC106582687 coding downstream 502925 45443086 ~ 45456185 (+)
AMCG00013851 LOC101073987,LOC107714485,LOC106582685,LOC105898132 coding downstream 550576 45490737 ~ 45494667 (+)
AMCG00013850 cpne5b,LOC107714485,LOC105027122,LOC108280970,LOC108436414 coding downstream 611812 45551973 ~ 45569316 (+)
G47110 NA non-coding upstream 603753 44329293 ~ 44329547 (+)
G47107 NA non-coding upstream 634636 44298269 ~ 44298664 (+)
G47106 NA non-coding upstream 641504 44289057 ~ 44291796 (+)
G47080 NA non-coding upstream 709899 44222408 ~ 44223401 (+)
G47040 NA non-coding upstream 1013333 43919669 ~ 43919967 (+)
G47158 NA non-coding downstream 21448 44961609 ~ 44963472 (+)
G47184 NA non-coding downstream 327893 45268054 ~ 45268386 (+)
G47186 NA non-coding downstream 339593 45279754 ~ 45281095 (+)
G47188 NA non-coding downstream 343231 45283392 ~ 45283600 (+)
G47189 NA non-coding downstream 343679 45283840 ~ 45284159 (+)
G46945 NA other upstream 1492602 43438492 ~ 43440698 (+)
G46862 NA other upstream 1843657 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 1888864 43039984 ~ 43044436 (+)
AMCG00013777 NA other upstream 2271456 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 2284546 42644987 ~ 42648754 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other downstream 94611 45034772 ~ 45095669 (+)
G47206 NA other downstream 386497 45326658 ~ 45360882 (+)
AMCG00013872 NA other downstream 876211 45816372 ~ 45823228 (+)
G47398 NA other downstream 994498 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 1003410 45943571 ~ 45959194 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000133_00758442_00777188 NA coding CI01000133 null 758375 ~ 777700 (-)