AMCG00014676 (itgbl1,LOC107748609,LOC107690616,LOC107681304)


Basic Information

Item Value
gene id AMCG00014676
gene name itgbl1,LOC107748609,LOC107690616,LOC107681304
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26585481 ~ 26588394 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014676
CATGGCCTTTGCGACTGTGGGAAGTGTATATGCGATGACAACTGGTTTGGCGATGCCTGTCAGCACCAGGAGGACTGTAACCTTTCgaagaagaaaagtaaagagTTATGCAGGAACCCACAAGGAGTGGTTTGTTCTAATGCAGGCTCCTGTCACTGTGGCAGCTGCATGTGTAAAAACCCAGACGGCAAGGGCCTGATTTACGGGAAATTCTGCGAGTGTGACGATGGGGAATGCCTGGACGAGGAAACCGGAGAGCTGTGCGGAGGCCATGGAAAGTGTTACTGTGGAAACTGTTACTGTGCGGCTGGTTGGCATGGAGATAAATGTGAATTCCAGTGTGACATCAGCCCACGGGAGAGCAAAAGGAGATGCACATCTCCAGATGGCAAGATCTGTAGCAATCGAGGTCTGtcttaa

Function

symbol description
itgbl1 Predicted to enable integrin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Orthologous to human ITGBL1 (integrin subunit beta like 1).

NR:

description
PREDICTED: integrin beta-like protein 1

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014676 True 420 mRNA 0.50 3 26585481 26588394

Neighbor

gene id symbol gene type direction distance location
AMCG00014670 NA coding upstream 176390 26389232 ~ 26409091 (+)
AMCG00014669 LOC107748618 coding upstream 196258 26373224 ~ 26389223 (+)
AMCG00014668 pcca,LOC107654247 coding upstream 250120 26318031 ~ 26335361 (+)
AMCG00014667 pcca,LOC107719738,LOC107707835 coding upstream 341023 26203883 ~ 26244458 (+)
AMCG00014664 zic2,LOC106586042 coding upstream 413007 26168461 ~ 26172474 (+)
AMCG00014677 LOC107600373,LOC107569583,LOC107690616,LOC107748609,LOC107731761,LOC107681305 coding downstream 36367 26624761 ~ 26628707 (+)
AMCG00014681 NA coding downstream 271339 26859733 ~ 26866240 (+)
AMCG00014682 cdc16,LOC106581643,LOC107673708,LOC107597489 coding downstream 280832 26869226 ~ 26881796 (+)
AMCG00014680 NA coding downstream 298093 26886487 ~ 26890130 (+)
AMCG00014684 upf3a coding downstream 302338 26890732 ~ 26900814 (+)
G71859 NA non-coding upstream 353916 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 574481 26010799 ~ 26011000 (+)
G71817 NA non-coding upstream 625779 25952233 ~ 25959702 (+)
G71784 NA non-coding upstream 814992 25770209 ~ 25770489 (+)
G71772 NA non-coding upstream 837073 25745803 ~ 25748408 (+)
G71963 NA non-coding downstream 363902 26952296 ~ 26953253 (+)
G71995 NA non-coding downstream 438381 27026775 ~ 27027272 (+)
G72072 NA non-coding downstream 886670 27475064 ~ 27479444 (+)
G72169 NA non-coding downstream 1652172 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 1709275 28297669 ~ 28300813 (+)
G71525 NA other upstream 3729835 22855342 ~ 22855646 (+)
G71004 NA other upstream 8311121 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 9098431 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 10116272 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 10446449 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 316483 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 1247109 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 1280309 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 1713979 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 2208655 28797049 ~ 28837910 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_01692563_01725364 ITGBL1 coding CI01000009 null 1692563 ~ 1725364 (+)