CI01000009_01692563_01725364 (ITGBL1)


Basic Information

Item Value
gene id CI01000009_01692563_01725364
gene name ITGBL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1692563 ~ 1725364 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_01692563_01725364.mRNA
GACTATTTGTTATCTTTAAATACTAGCTTGCAAGCTTACAAGAAGATACAGACAGGAAATCTGCCAAAATGTGATACATTGCACGACCTATCGTCAGAAAGATTTTTCCTCCAGAAAGCAAGAGGGAGTCTGGTTGTCATTACTGGTGAAAAGGAGGATTGCAAACCACCACCCACCCATCCAACATCTGGCATATGTTCACCTACATGGGAAGAATGGAGGCAGGTGGGTGGAGAGTGCAAAATCTCCCCAGAATCATCACTGAGGCGCTGTCGGACCTCCGACGGGTTGATCTGTAGCGGAAGAGGCGAGTGTGAGTGCGGGATTTGCATATGCCAGGTCACGGAACCTGGAACATTCTACGGACCGCGATGCGAATGCCATGACTGGGTCTGTCCGACATATGATGGGAAGACCTGTGCAGATCATGGGACATGCAAATGTGGAAAGTGTTTCTGTGATGATAACTGGTTTGGGGAATCCTGTCAGTATGAGGAGCAATGTTCCCTCTCCAGCAAAACCAGTAAAGACCGTTGCCGCAATGCCCAGGGTGTAGTTTGCTCCAATGCAGGCACCTGTCACTGTGGCAGCTGCATGTGCCATAATCCCGATGGGAAGGGCCTGATCAGCGGACACTATTGCGAGTGTGATGACAGCGAGTGTTTGGATGAAGACTCTGGAGAAGTTTGTGGAGGCCATGGAAAGTGTTACTGTGGAAACTGTTACTGCTCGGCTGGTTGGCATGGAGATAAATGTGAATTCCAGTGTGACATCAGCCCATGGGAGAGTAAGCGGAGATGCACATCTCCAGATGGCAAGATCTGCAGCAACAGAGGCACATGTGTCTGTGGAGAGTGCACTTGCTATGATGTGGATCCCTCAGGAGACTGGGGTGACATCCATGGAGAGAACTGCGAGTGTGACGAGAGAAGTTGCTATGCCATGTACGACAGATACTCGGATGATTTATGTTCAGGTCACGGCCAGTGTAACTGTGGCAGGTGCGATTGCAAAGAAGGTTGGGCTGGAAAGAAATGCGATCATCCTCTCTCCTGTTCGCTGTCTATGGAAGCCAGTCAGAAGAAGTGTCGGGGAACCTCCAGCCTGCCCTGCTTTGGCAGAGATTCACTGTCCCTCCGTACTGTGAGCCTGTGCTATGAGACGTGGCCAGAAAATGATGATTTATACGTCTGTTTACATAGAATTTCACCCATGATTGGAGCTATAAGTCTACTTGCTGCATCTATTATCCTGACAGCAGAAGCGAAATATTGCAAAAGAAAAAGTGGTAAAGCTAGTACTTCTCCCCAGATTGCTCTATATTCAGTACCAGCAAATGATGAGAAGTGTTTGTGGCACAAGATTGATATAGTCTTGGCATACATCATCAACAGTCTTTCCGGATATGCCAAAGAAAAACTTCAAAATAGGAACGGGGCTTTTGTCTTGGCACCTGCGCAAGCATGGCTCCCTAGAGAATTGAACTTGCCGGATGGCTGTCTCTCAAATATTGTGAAGGAATTAATTGTTTCGATTCGGACCAAAGCGCAATACATGATCAGCGAGGGAGCCATTAATCACACTGAAGCTGCCAGTGCTGCTTTCTCCATTTACGCACTCATAATGCCACCAGCCACTGTGAAAGCATATGGAAAAGATACACTTTCTCTGTCTAGTGCATCATGTGTTTCATACTGTCCGTATAAAGGGCAGTGTTTGTGTGGCCAGTGCACATGCCACCCACCCGGAGATAAACGCGTACACGGCAAGAACTGTGAGTGTGACGACAGGCAGTGTGAGGACCTGAACGGAGAGATCTGTGGAGTCTCCTTTCATGGCCGCTCTCAGAACATACACATTATGGATTGGATCAATACAGGCACAGAGGTGCACCCTTTCTTTAACAGAATTGAGTGCTTGTCAAAACAATCTTACTTTAAACTCTTAAAAGTTTACAGTAGGCGATATTTGAATTTGGATGTGAGG

Function

symbol description
itgbl1 Predicted to enable integrin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Orthologous to human ITGBL1 (integrin subunit beta like 1).

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_01692563_01725364.mRNA True 1986 mRNA 0.47 13 1692563 1725364

Neighbor

gene id symbol gene type direction distance location
CI01000009_01570544_01595199 NA coding upstream 97097 1570079 ~ 1595466 (+)
CI01000009_01454610_01484907 NA coding upstream 206735 1453708 ~ 1485828 (+)
CI01000009_01431700_01434463 NA coding upstream 258021 1429873 ~ 1435328 (+)
CI01000009_01402330_01407372 ZIC2A, ZIC2 coding upstream 284808 1401061 ~ 1407755 (+)
CI01000009_01351236_01380055 CLYBL coding upstream 312278 1351236 ~ 1380285 (+)
CI01000009_01733394_01738937 ITGBL1 coding downstream 5930 1731294 ~ 1739468 (+)
CI01000009_01892219_01893628 NA coding downstream 166855 1892219 ~ 1893754 (+)
CI01000009_01897343_01919208 PIKFYVE coding downstream 171979 1897343 ~ 1919516 (+)
CI01000009_01966898_01976924 COQ10B coding downstream 241534 1966898 ~ 1977734 (+)
CI01000009_01990700_01991267 HSP10, HSPE1 coding downstream 265336 1990700 ~ 1991387 (+)
G51110 NA non-coding upstream 35193 1657059 ~ 1657370 (+)
G51062 NA non-coding upstream 209611 1482718 ~ 1482952 (+)
G50937 NA non-coding upstream 212097 1446595 ~ 1480466 (+)
G51125 NA non-coding downstream 15248 1740612 ~ 1863136 (+)
G51188 NA non-coding downstream 124463 1849827 ~ 1854511 (+)
G51193 NA non-coding downstream 140080 1865444 ~ 1865801 (+)
G51194 NA non-coding downstream 144278 1869642 ~ 1869855 (+)
G51195 NA non-coding downstream 150618 1875982 ~ 1876208 (+)
G51122 NA other upstream 10597 1680146 ~ 1681966 (+)
G50920 NA other upstream 922330 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 1596776 94371 ~ 97230 (+)
G51274 NA other downstream 529735 2255099 ~ 2350486 (+)
G51529 NA other downstream 1336669 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 1477408 3202207 ~ 3208984 (+)
G53388 NA other downstream 3796878 5522242 ~ 5540638 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014676 itgbl1,LOC107748609,LOC107690616,LOC107681304 coding CM030128.1 CM030128.1 26585481 ~ 26588394 (+)