CI01000009_01454610_01484907


Basic Information

Item Value
gene id CI01000009_01454610_01484907
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1453708 ~ 1485828 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_01454610_01484907.mRNA
ATTTAAAACTCAGAATACAACAATGAAGACCCTCTTGTCATACTTGATTGACAAGGCCTACCCAGATTGGTGTGTTAGCGCATCCAAGAGGTCACTGTTTAATTGCATTATTTTAAAGCTTCTGCCACCCACTATTACTAAAGAGACACAATGACCACCCTGCCATGTCTGCTACTCCAAACACACACTCATCTAAATTGCATTAGAGTTCACTGAAAATAAGCACCATATCTATTCACTGATGTCCATTGTCTCTTGACTTCGGTTCAGACACACAAGGTGGTTGAGTGAGCAGGAACGGTCTTTTCTCCCAGAAAATCTCTCAAAAAGCTTTTTAATTACGACAAGCCTTGTTGGCATCCATACATCCTGAACTACCCATCCCAATGTCTTCACTTCATCCTTCAGAATGTCCCTATAATGACCCGTGTGACACTGGAGAGACAAACAGAGACCTCTTCCCATTCTCCCCACGGCTCCAGTCCCAGTCGCACCTGTTCGCCGTGCTAGTGTCCACGCAAAAAGCCAACTCATTAGAGCCGGAGGCCATTGTGGGGCATCTTTTAGGAGGAGAACTGTGGTTTGAAGTGGAGTTTGTAGGTTTGGCAGATGAGATGGCTACAGAAGGAAGGCACTGCGATTTTCCCTGTGAAAACATTATCAGCCATCTCGCCTGTACTGTTGACTTGTGGGGAGCGCCCGTGGTCAAAGGTGTGGTTAACGGCTTAGCCCGTCATCCCAAGCGCTCGGTCACACACTCCTCAAAGTGGCATCGCCTGAAGGGCACTGATAACACGCATCCCGTGCTCCTATTGGCTGATGTCCAGAGAGCCGGCAATCTCACACAGAAGAATCTGTACATTAGAGGAAAGGACAGGTTAGTGAAAGCAGGCGAATGGAGGAGGCTAGAGCTAAACTGGTTGGCAGCTGCTGGCTGCGCCGTGTCCTGTCTCCCAGACTCGATAGTGTTAGATTTGGCACGGGCCGCCTGCAGTCAGATCGGCCACAGACCAGCCAGTCTGTCACCAAAGGAATACCAGTGCTGGTGGACGAGAGCGTGCAAAGCTTTGTCTATCATTATTGCTGTGAGCAATCAGTGTGATGCCAGCGGGACGGTGGACGCGTTGACAGCTGTAATTATGTATCTCCATGGTGATCACTTTTGGCCTGTCATGGAGGCCAGGCTGGCTCCTCCTCCTCTGGCATTTAATCAGATTGGGCTGTCACTTGTCAGGTGGACGGCGGCTGGTTGGGGCGTACGTACAGGAAGCAGAAAGTCTGAGGTGCAAGTCCATGGACTGCTAATGAGACTAGATCTACGGTTTGTGCATTCAGTAAACAGAGCCGATGAGCGGAGACATTGTCCTTCAACTGCTAAGATAATGAAGTACTGTGGGATCCGACTTCCGGGCTGGCCAGGGCAGGTTGGAGTAAGTTCGGCCCAGCGCAGGGAACTGCAGCGTGGAGCAGGGCGCCATGGCAGGTGCCTGTGTCAGCAGTACTGCCGGCCAAGGGGAGAGGTCAATCTCACACCTCCAGCAGGTGGGACACAGGCTTGCATTAATGATGCTTACAGTGAGATAGCTGCAGTGTCAGGGGGAGAGGAAAGCATCGAGCCAGGTGTCTCCTCCAGCTCTGAGATTTACACAGGAACACAACACCGTTAACAGGCTTCTAAATTAGGAATTCATGCTTGATGAAGTTGTTGGGACAGTGAAGAAAGGCATTTGTGCTCAACACTTTTTTAGAGAAAGATAATGTTAATATCACATAATACTGTGTATGGGCTTTATATAAAGCCCAAAGACTTTATTTAAAATTAAATAAAAGACTTTAATTTAATCTTTATTTAAAGGTTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCGTTCCACACCCATAAGACATTCTTTCATCTTCAGAAAACAAATTAAGATATTTTTGATGAAATCTGAGAACTGTCTGACTCCTCCATAGACAGCAATTTAACCACCACTTTCAAGGTCAGAAAGGTACTAAAGACATCATTAAAATAGTTTACGTGACTGCAGTGGTTCACTGTTTACGTCCAGCGCTTCCATGTTCTACATCAGAACGCACACTCAGTATTGGCAGACGCTGTAACATGTGAGCAGCACGACGCATGCGTGTGATGCTGACGCAGGAGCTGGCCAATAATGAGTCGGCGTTCTGACGTAGAACCTGGAAGTGTTGGACGTAAACAACGTATGAGAATGACACAGAAGAGAAGATATTGTTGAATAAAGTTGTTATTTTTGTTTTGTTTTTGCGCACAAAAAGTATTCTGGTTGCTTCGTAAAATTAAGGTTGAACCGCTGCAGTCACGTCGACTGTTTTAACAATGTCTTTAGTACCTTTCTAAACCTTGAAAGTGGTGGTTAAATTGCTGTCTATGGAGGGGTGAGACAGCTCTCGGATTTCATCAAAAATATCTTAATTCGTGTTCCGAAGACGAACGAAGGTCTTACGGGTGTGGAACAACATGAGAGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAACCCATTAAAAGACTCGA
>TU58186
GTCAGAAAGGTACTAAAGACATCATTAAAATAGTTTACGTGACTGCAGTGGTTCACTGTTTACGTCCAGCGCTTCCATGTTCTACATCAGAACGCACACTCAGTATTGGCAGACGCTGTAACATGTGAGCAGCACGACGCATGCGTGTGATGCTGACGCAGGAGCTGGCCAATAATGAGTCGGCGTTCTGACGTAGAACCTGGAAGTGTTGGACGTAAACAACGTATGAGAATGACACAGAAGAGAAGATATTGTTGAATAAAGTTGTTATTTTTGTTTTGTTTTTGCGCACAAAAAGTATTCTGGTTGCTTCGTAAAATTAAGGTTGAACCGCTGCAGTCACGTCGACTGTTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_01454610_01484907.mRNA False 2588 mRNA 0.46 8 1454224 1485828
TU58186 True 357 lncRNA 0.43 1 1485264 1485620

Neighbor

gene id symbol gene type direction distance location
CI01000009_01431700_01434463 NA coding upstream 19682 1429873 ~ 1435328 (+)
CI01000009_01402330_01407372 ZIC2A, ZIC2 coding upstream 46469 1401061 ~ 1407755 (+)
CI01000009_01351236_01380055 CLYBL coding upstream 73939 1351236 ~ 1380285 (+)
CI01000009_01219880_01224537 NA coding upstream 229355 1219637 ~ 1224869 (+)
CI01000009_01183737_01206031 NA coding upstream 247367 1182091 ~ 1206857 (+)
CI01000009_01570544_01595199 NA coding downstream 84251 1570079 ~ 1595466 (+)
CI01000009_01692563_01725364 ITGBL1 coding downstream 206735 1692563 ~ 1725364 (+)
CI01000009_01733394_01738937 ITGBL1 coding downstream 245466 1731294 ~ 1739468 (+)
CI01000009_01892219_01893628 NA coding downstream 406391 1892219 ~ 1893754 (+)
CI01000009_01897343_01919208 PIKFYVE coding downstream 411515 1897343 ~ 1919516 (+)
G51059 NA non-coding upstream 101801 1352013 ~ 1352423 (+)
G51043 NA non-coding upstream 150156 1303599 ~ 1304068 (+)
G51041 NA non-coding upstream 163448 1290543 ~ 1290776 (+)
G51039 NA non-coding upstream 165552 1288200 ~ 1288672 (+)
G51110 NA non-coding downstream 171231 1657059 ~ 1657370 (+)
G51125 NA non-coding downstream 254784 1740612 ~ 1863136 (+)
G51188 NA non-coding downstream 363999 1849827 ~ 1854511 (+)
G51193 NA non-coding downstream 379616 1865444 ~ 1865801 (+)
G51194 NA non-coding downstream 383814 1869642 ~ 1869855 (+)
G50920 NA other upstream 683991 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 1358437 94371 ~ 97230 (+)
G51122 NA other downstream 194318 1680146 ~ 1681966 (+)
G51274 NA other downstream 769271 2255099 ~ 2350486 (+)
G51529 NA other downstream 1576205 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 1716944 3202207 ~ 3208984 (+)

Expression


Co-expression Network