CI01000009_01733394_01738937 (ITGBL1)


Basic Information

Item Value
gene id CI01000009_01733394_01738937
gene name ITGBL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1731294 ~ 1739468 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_01733394_01738937.mRNA
GCATAAAAGGAGCTACCAGTGACGTTGCACCTGCCATTTTCATCAGCCGTGTCCACAGCCTATATATTTACTCCACAAACTAACTCTACAAATAGATGGACCTCTCAACTGTACGCAATGGAGAAAATCCAGGGCGACTTTGAGCAGACCAAGCGAAACATGATTATGTATTTATGCTAAGCTAGCGACATTGGGCATCAACCACACGGCAAAAGCTAATACTTTTTCATATGCTGTCTACTTTCTTTGTATAACAGTTCTATCTAATAACATATTAGACAGGACTGTTAAACAGATTGTAAACTAATGAAGACGGAGAATGCGAGCACTGTGTGCTCAGGATCTGTCTGAACTGTTCTCAGCGCCGTCAAAATAAAAGTAACAACAACAAGCGCAGTTTACGTCACTTCAGGCCTAGGGGAACATTAGTTCTCGGGGAACCACACTTATTATTATTATACCATGTATATGTTGACTTTTTTATTATTATTATTTAAAGAAAAAAACAAACCAATATATAGTTGACATTTGAGGTTTAATGCTATAGAAAAACAATAAAAAAATTGTGTTTTCAGATTGTTTTTTTATTTTTATACAAAAATATGCCATGCAGTTGCTTCAAACAATGGTATAAAGCTATTCAATACATCATTCAATGTAAATTGTGATAATTGTAATTAATAATCGCAATTACAATTTCAAGGGAAAAATTGACAATTATGATTTTTGTCATAATCGTGCAGCCCTATTCTGAAGTGAGGCGATGGGTTTTTGTAAGAAAAATATCCATATTTAAAACTTTTTAATCTAAAATAACTAGATTCCGCCGGACAACCGCATGCATACTGCGCAAGTCGACTTGCGCCAAATGATTAACCTCTGACGCGATGAATGACGCAGGACGTAGGAGTATCATAAGCTTAGATGCCTCTCGCGGTTCAAACAAATAGGGCTGTGCAACAAACTCAAGCTCCTCTTCTCTTCAGGTCAGAGTTCACTCTTCTGCTGCAAATCGATGTGTTCGGCCGTCTGCCGGAAGCTAGTTATTTTACTTTATAAAGTTTTAAATATGGATATTTTTCTTACAAAAACCCATTGCTTCATTTCAGAAGGCCTTTATTAACCCCCTGGAGCCATATGGATTATTTTTTATGATGGATGGATGCATTTATTTTGGGCTTCAAAACATGCCCCCCGTTCACTACCATTATAAATCTTTGGAGAGCCAGGATATTTTTAAATATATCTCCAATTGTGTTCATCTGAAAGAAGATAGTCATATACACCTAGGATGGCTTGAGGGTGAGTAAATCATGGGATCATTTTCATTTTTGGGTGAACTAACCCTTTAATAGGTAACCAGTTTAGAGATGATAAAATTTTGGTTATCATATTTTCTTGACATGGAAAGAAATCTAGCAGCTGCATTTTAGACTAACTAGAGTTTGTTGATTGAGGAAGCAGGACAACCACCTAGTAGTGCATTACAATAATCCAGTCTAGAGGTCATGAACTAACTTTTCTACATCAGAAACAGATAACATGTTCCATAGCTTAGCAATGTCTATAAAGTGTAAGAAGGCTGTTTTTTTAACATGTAAAATGTAATATTAAAAGAAAGTTGCTGTGTAATATAACACCCAGATCTTTAACTGGAGAGGATGAAGTAATTCACCCTTCTAGGAGCTTCTGTGTACAGGTTTTTGGTCCAATAAGTATATCTCTGTCTTATCCGAATTTAATTACTGGTCATCCAGTATTTTATATCTTTAACACACCCTGTCAACTTGGATCATTTAGAAGTTTCATCTAGTCCAGATGAAATATGTAACTGAGTACCATCAGGATAACAATGGAAACTAATTCCATGTTTTCTAACAATATTACCATATATAGGGAGTCCATGGCATCTAAAAGGTTGAAAACCCCTGCTCTAATCTAGATCTATGTATCAAGCATAAATCAAGATCTAGGATATAGATAATAATTTTTTTTTCAAGCCAGCTGAAACAAAGGATATGACCGAGCACAATTTAGACAGCTAGCGCGTTACAAATGCCAAAACACCGCCTCATCCAAAGCGATCCGAGAGGCTAAAGAATGTTTTATCCCATGGGGTCCATAAGTGAGAAGAGCCATATAGCTACCGCAACACCATTAGCCAGTCTGGAAGCGAATCCCTGTCTGTTTGAACCAATTATATTTGCCTGGATCAATCAGACTGTTGCTTTGTTTTGGCAGATACAAATGGTGGTTTTCTTTGGCCACGGCTTCTGCTCGTGTGGCCGCTGTATCTGCAGTGATGGATGGTTTGGGAAGCACTGCCAGTTCCCCCGCAGCTGTGACATGACGGACGAGCAGAGCAAGAGCCTGTGCGAGACAGCCGACGGCATCATGTGCTCTGGAAAAGGCTCTTGTCACTGTGGTCACTGTATCTGCTCACCACAGGAGTGGTACATTTCAGGGGAATTCTGCGAGTGTGATGACAGGGAGTGCGACAAACATGACGGGCTGGTTTGCACAGGGAACGGCGTGTGCAACTGCGGAAATTGTGACTGCTGGGAGGGCTGGACAGGAAACGCCTGTGAATTCTGGGTTGGAGAGGAGTATTAACCCCTGGTGGACACACTTAAAGACTGTTTCTGTTGTTAGTCAAGACAAGAAAAGGTGGCTACATCAACAGCAAACAAGGGATTTTAGAAATTTGTGCAATATAACAGCATTTAAATTCTATTAATTAAAACTGTGGTTTCAAATCTATTATATGCACATAAAACAGCTGTGGGAGATGACTTCTATAATCCTCTATAGTTTTCCTTATAACATATTATATATATATATATATATATATATATATATATATATATANNNNNNNNNNTATATATATATATATATATATATATATATATATATATATATATATATATGAAAATTGTGTATAATAATGCTTACATAGACTATTGACTGACACATAAGCACAAGTAAAAGGAGAGAATCCATGGAAATGGCCAACAGAGAAATAAGAGCATTTTATTATTATTCAGGTTGCTGTTTTTCAAAGCGCTGCTTGTGTGCAAAGTTTTGACCCTATTTTATTTACGGTACGTTTCACGTGACAAAACTGTTGTAAACAGCCTGATGCCA

Function

symbol description
itgbl1 Predicted to enable integrin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Orthologous to human ITGBL1 (integrin subunit beta like 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_01733394_01738937.mRNA True 3144 mRNA 0.37 4 1731294 1739468

Neighbor

gene id symbol gene type direction distance location
CI01000009_01692563_01725364 ITGBL1 coding upstream 5930 1692563 ~ 1725364 (+)
CI01000009_01570544_01595199 NA coding upstream 135828 1570079 ~ 1595466 (+)
CI01000009_01454610_01484907 NA coding upstream 245466 1453708 ~ 1485828 (+)
CI01000009_01431700_01434463 NA coding upstream 296752 1429873 ~ 1435328 (+)
CI01000009_01402330_01407372 ZIC2A, ZIC2 coding upstream 323539 1401061 ~ 1407755 (+)
CI01000009_01892219_01893628 NA coding downstream 152751 1892219 ~ 1893754 (+)
CI01000009_01897343_01919208 PIKFYVE coding downstream 157875 1897343 ~ 1919516 (+)
CI01000009_01966898_01976924 COQ10B coding downstream 227430 1966898 ~ 1977734 (+)
CI01000009_01990700_01991267 HSP10, HSPE1 coding downstream 251232 1990700 ~ 1991387 (+)
CI01000009_01993176_01999494 MOBL3, MOB4.S, HSPE1, MOB3, HSPE1-MOB4, MOB4 coding downstream 253708 1993176 ~ 1999873 (+)
G51110 NA non-coding upstream 73924 1657059 ~ 1657370 (+)
G51062 NA non-coding upstream 248342 1482718 ~ 1482952 (+)
G50937 NA non-coding upstream 250828 1446595 ~ 1480466 (+)
G51125 NA non-coding downstream 1144 1740612 ~ 1863136 (+)
G51188 NA non-coding downstream 110359 1849827 ~ 1854511 (+)
G51193 NA non-coding downstream 125976 1865444 ~ 1865801 (+)
G51194 NA non-coding downstream 130174 1869642 ~ 1869855 (+)
G51195 NA non-coding downstream 136514 1875982 ~ 1876208 (+)
G51122 NA other upstream 49328 1680146 ~ 1681966 (+)
G50920 NA other upstream 961061 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 1635507 94371 ~ 97230 (+)
G51274 NA other downstream 515631 2255099 ~ 2350486 (+)
G51529 NA other downstream 1322565 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 1463304 3202207 ~ 3208984 (+)
G53388 NA other downstream 3782774 5522242 ~ 5540638 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037242 itgbl1 coding NC_007120.7 CM002893.2 31752628 ~ 31833565 (+)