CI01000009_01570544_01595199


Basic Information

Item Value
gene id CI01000009_01570544_01595199
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1570079 ~ 1595466 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_01570544_01595199.mRNA
ATATAAATACCAAAGTGCTGCAACCAGCCAACTGATATTAAATCCATATTTCATGCCTTTCGCATATGGGGGCAATTATCAGTGACCGAAAAAAATCAGAACATGAGGTATTTATGCATATTTAGCAGACAAAAACACTGAAATGCAGCTAAATGATTTGCAGGGGTGTCTGCATTAAGTAGATGGTAATAGGAACACATATTAATTGTTTGAATTTTCAGACAGAAACACAATTACAATATGGTACTGCTGGAATATGAGCAAATATCTTTAACTAATAAAATAAAAAAACAACAACTTAAAAATGTTTCTTCAAAAAATATTGCATAAAGTATTGTATCATCATCACAAAAGCACTATACAATTCTTAATACACTGGTCTTATTTGTATATCCTGTGGTGAAATTTTTATTTACTATTACATTTTTTGTCATTGTTTTTGTAGACGAAAGCTGTTAAGAGAAAATGTCTCTGAGGGGCCATCAGAGACCTCCTAAACTGGAGCGACTGGAGTCTGTCATGAGCCAGTTCTCTGGGAGCTTGGACCAAGATGATCTACAAGATGACCCAGAGGAGCTTGACTTAAGTGGCCATACTGACCTCTGTGGCGGTAAACTGCTGGTTCAGTGTGTCTTTGCTTCTATCAGTGACCTCATAGGACAGCTGACCTCTCAGCATACTGCTTTCATTATGTCAGATGGAGAGAACAATATTTCAGCAGAATCAAGGAGCATATCATTTCAAGCAATATACAACTTTCTTCCATTCAATTCCCTGGATGGTGTTATATTTCTTGAAGAAGTGCCAATCCTGGTGCAGGTGACAGAGGTGGAGCGATTCACATCTACAAGGGTGCTGAATCCCAACCTGTATACTGTAGAGTTAAGCCACGGAAACTTCAGCTGGAAAATCAAGCGTCGTTTCAAGCACTTCCAGGCACTTCATCAGGAGCTGCTCAAATTCAAGGCCCTCTTAAAAATCCCCCTGCCAAGCCGAATACACTCAGTCAAAAGGAGGTCATTCAAAGGCCACAAACGGTTTCACGGAGAACACATACCAACATTACCACGAAGACCTGATGCCCTTGTCAAAGAGGAACAGCTCATCAGCAGAAAATTGCAACTTGAAGACTATCTGAGGAATATATTGAAAAGGCCTTTATACAGGACACATCCTACAACGAAATCTGGAGGAAACACATTCCCTGTATGTTACTGGTGCGGATCCAACAGCGTCTGTTACCGGTGGTCCAAAAGATGGCTGGTGGTAAAAGACTCCTTTGTTCTCTACATGAGGCCAGAAGATGGCCAAGTAGGCACCGTGATTCTGGCTCTTACTATCAAGTGCTCCACATATAGGCAGGCTCGTTGGTGGGGACACTCCATAGACGAGTTTTCTCAAATGTTTGGACAGGACTTCCTGAGGGAAAACCGCCATGGGTCTTTCACACCTGTTAGAGAAAACACTGTCTCAAAATGGTTTGTCAACGCAGCTGGATACTTTGATGCCATAGCTGATGCCCTGGAAGCAGCAAAGGAGGAAATCTTCATCACAGCCTGGTGGTTAAGCCCAGAAATCTTCCTCAAACGACCGGTAGTAGATGGGAACATGTGGAGATTAGACCATGTCCTCAAGCGAAAAGCACAACAAGGAGTGAAGATCTTTGTCCTGCTCTACAAAGAAGTCGAGGTAGTGATGGGTCTTAACAGCGAGTACACAAAGAAGACCCTGATGGGACTTCACTCTAACATCAGGAGGAGTGACACTGGGAAGTGGCTTGGGATCCACACCCCAAGGACGTGTGCGGCAAAGCAGCTGGATGGAGGTATTCCTGGGCCCTGCTGGTGTAGAAACACCTGCCAGGGGCGGCGTCCTCCAGAGGCTCCGCCAAAGCTGGTGGAGACGCAGCTGCTTCGCACAAAGGTCATCAGACACCCTGATCACATGCCCTCCACAGCATTGCTCTGGGCTCACCATGAGAAGTCGGTGGTGATTGACCAGTCACTGGCCTTCCTGGGAGGGATTGACCTGGCCTACGGAAGATGGGATGATTCCCAACACCGACTGACTGATGTGGGGAGTGTGAGAAGAAGCCCTCAGCACAGTCCTGCTCTATCCCCCAGCCTCACTCATCAGTCAGTTGCCCTGGTGGAGGAGGGCGAAGAGATGAAGTTTAATGTGATAGTTGAAGAAATTCAGACTGGAGAAGGAGGAGATTCAGGCTCAGTGGAGGATCCAGGTGAGATCTGTGTAAGCTTCTCTCTGCCCATAGAGGAGGAACAGGGAGAAAACAACAGAGCAAGACTGCTAAGAAAGCCCTCAGAGAAAAGTCGCCACAGCTCTGATGGAACAGAGTCCAAACATCACAGTGGGAATAGTCTTAATTCCAAGACTCCTCTCACTCGGGAATGTTACTCCAAGAGCTTGTCTCTACATTCCAGTGATTCGTACTCTCTTGGCCTGCATCACTCTCTCCCTTTGCCTTACGAGACCAGTTCCCTGAGAAGTTACATAGGCAGTACCGAACTCTGTGGAGAGACTCGTTTCTGGCACGGCAAAGACTACTGCAACTTCATCCTCAAAGACTGGGTCAAACTCAACAAGCCTTTTGATGATTTCATTGACAGGTATAAGACACCTCGGATGCCCTGGCATGATATAGGGGTGATGGTTCATGGAAAGGCTGCAAGAGATATTGCACGACATTTCATTCAGAGGTGGAACTTTACAAAGCTGGTGAAGAAGCGGTCGGGGGTGACGTGCTACCCCTGCCTCATGCCCAAGTCTCTCTCTGCACCCATGGTGCCAGCTGAGTACGACGGAAAATCCACACAGGCTAACGTTCAGAACCAGTTCTTCATCAGTTGTGCTGACAAATCCATTCACAACAGCATTGGAGATGCACTCACTGAGAGGATCCTGCGGGCGTACAGGGAGAAGAAAAATTTTCGGGTCTATGTGGTGATGCCCCTGCTGCCCGGCTTTGAAGGTGACATCTCGTCAGGGGGGGGCCAAGCCATCAAAGCAATCATGTACTTTAATTACAGGACAATGTGCAGAGGGGAGCACTCCATTATTGAGAGGCTCAAATGTGTGATGGCAGATTGCTGGATCAAGTACATCTCATTCTGCGGTCTGCGCACTCACGCTGACCTGGACGGGCGTCTGGTCACTGAACTCATTTACGTGCACAGCAAGCTCATGATCGTGGACGATTGCACTGTCATTATTGGCTCAGCAAACATCAATGACAGGAGCATGCTGGGAAAGAGAGACAGTGAAATGGCTGTGGTTGTTGAAGACACAGAATTCCAGCCCTCTGTCATGGATGGAGAGAGTTATCAGGCTGGCAGGCTTATTCTTGGCTTGCTGGGAGACAATATAGACATCAGTGATCCCATCAGTGACCGATTCTACAAGGAAATCTGGATGGTGACAGCAGCCAAGAACGCCAGTGTCTACGACAAGGTCTTCAGATGTCTGCCCACTGATGCAGTCCTGAACTATAAGATACTGAAGGACTACATGTCACGTCCGTGCATGGCTGCCGAGGACCCTGCACAGGCCTGCACTGAACTCAAGAAGATACGAGGCTTTCTGGTCCAATTTCCCTTGTACTTCCTGTCTGAGGAGAACCTTTTTCCTTCCTTCAACTCTAAAGAGGGAATCATGCCCATCGAGCTGTGGACATAGCCTCTTTGAAACTGTAATGGCTGCCCTCTTTTTTTGATGCGTGTCATCTAATGATGCTATATGTGCATGCATACTTTTGTAGAGCAAAAACTACCTCTGAGCTATCATCCATAGACGCTAGCTTTACGTGTCGCTGTGAAGTCTCAGACAGTCTTAGTGTGTCTAAACCTTTATTCTTCTGCTGTATAAATGTCCATTGTCCCTGCAGGTTTATAACTGAACTCTCTTAATGAAATATACATGGACACTCTGCAGCTGTTGTAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_01570544_01595199.mRNA True 3960 mRNA 0.46 26 1570079 1595466

Neighbor

gene id symbol gene type direction distance location
CI01000009_01454610_01484907 NA coding upstream 84251 1453708 ~ 1485828 (+)
CI01000009_01431700_01434463 NA coding upstream 135537 1429873 ~ 1435328 (+)
CI01000009_01402330_01407372 ZIC2A, ZIC2 coding upstream 162324 1401061 ~ 1407755 (+)
CI01000009_01351236_01380055 CLYBL coding upstream 189794 1351236 ~ 1380285 (+)
CI01000009_01219880_01224537 NA coding upstream 345210 1219637 ~ 1224869 (+)
CI01000009_01692563_01725364 ITGBL1 coding downstream 97097 1692563 ~ 1725364 (+)
CI01000009_01733394_01738937 ITGBL1 coding downstream 135828 1731294 ~ 1739468 (+)
CI01000009_01892219_01893628 NA coding downstream 296753 1892219 ~ 1893754 (+)
CI01000009_01897343_01919208 PIKFYVE coding downstream 301877 1897343 ~ 1919516 (+)
CI01000009_01966898_01976924 COQ10B coding downstream 371432 1966898 ~ 1977734 (+)
G51062 NA non-coding upstream 87127 1482718 ~ 1482952 (+)
G50937 NA non-coding upstream 89613 1446595 ~ 1480466 (+)
G51059 NA non-coding upstream 217656 1352013 ~ 1352423 (+)
G51110 NA non-coding downstream 61593 1657059 ~ 1657370 (+)
G51125 NA non-coding downstream 145146 1740612 ~ 1863136 (+)
G51188 NA non-coding downstream 254361 1849827 ~ 1854511 (+)
G51193 NA non-coding downstream 269978 1865444 ~ 1865801 (+)
G51194 NA non-coding downstream 274176 1869642 ~ 1869855 (+)
G50920 NA other upstream 799846 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 1474292 94371 ~ 97230 (+)
G51122 NA other downstream 84680 1680146 ~ 1681966 (+)
G51274 NA other downstream 659633 2255099 ~ 2350486 (+)
G51529 NA other downstream 1466567 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 1607306 3202207 ~ 3208984 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014670 NA coding CM030128.1 CM030128.1 26389232 ~ 26409091 (+)