AMCG00014741 (LOC106586690,LOC106582147,LOC106575755)


Basic Information

Item Value
gene id AMCG00014741
gene name LOC106586690,LOC106582147,LOC106575755
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29383488 ~ 29398221 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014741
ttatgtgttttctgGCGGTTTGCATCGACGCTTTTCGATGAAATGTTGTTTCCTGTGCGGCCGGCTGTTAAAAACGACGCTCATATGCCGGCGGAGGTGTGGAGTTCGCAAGCGCGGCTGGAGAAGTGGCACTAGCGGCGAGAGAGGGGACAGGGCAAAATGTGGCATGTGGGATCCATTAACCCTGTGTGCACAGCGTTGGGGTTTTTACCTACAATATGGGCACTTTATTGTGGGTCTGAACACCTGAGTGCTGTTTATTACGGGACAGGGACGCCGGGTTTCGCGTGAGCGGGATGAATTATGACCGAGATAGAGCAAACGGGGCTGGTCGGCCTGCTCGCTATTGTGTCGgataaatcataaaatagtTGCCCACGTTTTGGTGTTAAAAACGACTAAGTAGCCCAACTAACGAACAAAAAGACGCCAAATGATACATTATAGTTTCTGAAAGGGTATTGATAAGCGAAACACGTCGGAAATTGATTAAAACGTTGTTTTTATTGAAACGGCCTACTGCTGGAAGTGAGACCGGGCAGCCCCGGCCGAAGGAAGCGGCAAGGCAGCGATGAATAATTAGTTGATCGCAGTCGACTGctgggaaatatatttttgctctACTGCAACTTTTAACTAGCAAGCTATCTGCTGTATGTTCGCAGAAAAcgaatacacatttatattaatgtatgcatcGGGTACAAAAATGCAGCTACTGATCCGATTTGGTCGCGGTCTTGTAGCGCAGGTTTCGGCAGggctgcgcagatctgcactttGCTTGTGTAATATAATTGGTTCCAAGGTGCAGATCTGTGTAGAACTGCGGAAATTGCGCTACAAGAAATCGacctttattttgctttctagGGCACATTAGGATGTACCAGGAAGTTgttgattttaataatcattGCTTTTAATGGCTACCGATTTTAAAATTATGGTCATGGGTTGTATAGATAATTTTACAATGAGTTGAAAGTATAACGTTTATAATATCGATAGCACGCCTCTCGTGGCTACATTGTACCTAGATGTATTACTAACCAGGCAATGTACACTGGATTCTTCGAGCATCTTCCAAAATCCTGTGTAATCACAATCACGGCTGGATTAACTTCAGTAGTCAATTGTTCATTCTACTTTAAAATTGGGGCATGTCGCCATGGAGACCGGTGTTCCAGGTTGCACAATAAGCCAACTTTCAGCCAGacCATTGCCCTCTTGAACATTTACCGTAACCCTCAAAACACTGCCCAGTCTGCTGATGGTTTACGCTGCGCTGTTAGCGATGTGGAAATGCAAGAGCATTATGATGAATTCTTTGAGGAGGTCTTCACAGAGATGGAGGAGAAATACGGGGAAGTGGAAGAAATGAATGTTTGTGACAATCTGGGGGATCACTTGGTTGGCAACGTGTATGTGAAGTTCCGTCGAGAGGAAGATGCTGAGAAGGCTGTAATGGATTTAAATAACCGCTGGTTCAATGGGCAGCCCATTCATGCAGAGCTTTCACCTGTCACAGACTTCAGGGAAGCTTGCTGTCGCCAGTATGAGATGGGAGAGTGCACTCGAGGAGGGTTCTGCAACTTCATGCACCTGAAGCCCATTTCCCGGGAGCTCCGTCGGGAGCTGTATGGTCGCCGCCGGAAAAGGCACCGGTCTCGCTCGCGATCTCGTGAACGTCGCTCCCGCTCCCGGGACAGAGGCAGAGGTGGAGGCGGGGGGCGTGACCGCGAGAGGAGAAGATCGAGGGATCGGGAGAGATCCGGCCGTTTCTGAGGGAGAGATGAGATTGTTCGTACCCACATAGAATTTGTTGTAGTCTTACAATGaccaaaatgtgtttgaaatgttggACTTGttacctttcttctttttttaagaaaaaaaaaaaagcttgctttctcaataaaacaaactttgtaGTGCTTCTACAGCCTGTGTTAT

Function

NR:

description
PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform X1

GO: NA

KEGG:

id description
K12836 U2AF1; splicing factor U2AF 35 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014741 True 1956 mRNA 0.46 8 29383488 29398221

Neighbor

gene id symbol gene type direction distance location
AMCG00014737 NA coding upstream 61896 29307940 ~ 29321592 (+)
AMCG00014733 NA coding upstream 254446 29120951 ~ 29129042 (+)
AMCG00014734 NA coding upstream 272850 29096129 ~ 29110638 (+)
AMCG00014728 gsk3b,LOC107559500,LOC107721573,LOC107551994,LOC107715908 coding upstream 466854 28905901 ~ 28916634 (+)
AMCG00014727 gsk3b,LOC107703010 coding upstream 492520 28881917 ~ 28890968 (+)
AMCG00014740 LOC107557921 coding downstream 2411 29400632 ~ 29421379 (+)
AMCG00014736 cryaa coding downstream 33300 29431521 ~ 29437107 (+)
AMCG00014743 NA coding downstream 142310 29540531 ~ 29558701 (+)
AMCG00014746 rev1 coding downstream 190580 29588801 ~ 29614037 (+)
AMCG00014745 txndc9,LOC107568936,LOC107668903,LOC106586783 coding downstream 245555 29643776 ~ 29649810 (+)
G72426 NA non-coding upstream 191210 29191971 ~ 29192278 (+)
G72415 NA non-coding upstream 223063 29157025 ~ 29160425 (+)
G72409 NA non-coding upstream 246135 29137129 ~ 29137353 (+)
G72354 NA non-coding upstream 392189 28989607 ~ 28991299 (+)
G72353 NA non-coding upstream 397912 28981122 ~ 28985576 (+)
G72767 NA non-coding downstream 1438615 30836836 ~ 30837169 (+)
G72768 NA non-coding downstream 1443339 30841560 ~ 30844670 (+)
G72769 NA non-coding downstream 1447941 30846162 ~ 30846421 (+)
G72783 NA non-coding downstream 1557684 30955905 ~ 30956284 (+)
G72789 NA non-coding downstream 1605151 31003372 ~ 31003788 (+)
AMCG00014738 NA other upstream 104339 29268329 ~ 29279149 (+)
AMCG00014739 NA other upstream 127134 29247875 ~ 29256354 (+)
AMCG00014729 NA other upstream 545578 28797049 ~ 28837910 (+)
G72175 LOC102776245 other upstream 1079415 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 1503688 27868703 ~ 27879800 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 445246 29843467 ~ 29846586 (+)
G72605 NA other downstream 453229 29851450 ~ 29851821 (+)
AMCG00014777 NA other downstream 1366130 30764351 ~ 30812287 (+)
G72785 fam160a2 other downstream 1579995 30978216 ~ 30978825 (+)
G72786 NA other downstream 1581349 30979570 ~ 30980252 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037647 u2af1 coding NC_007120.7 CM002893.2 9230446 ~ 9242777 (-)