AMCG00014740 (LOC107557921)


Basic Information

Item Value
gene id AMCG00014740
gene name LOC107557921
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29400632 ~ 29421379 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014740
CGCTGATTGGAGGAGAGGAGCGCGCAGACACCCACGCCGTAGCCAATCAGCGCGCACTCCAAACAAGGCGAGCTCCGAAACGATTGGTCGCTCACTCCCACTGCAGCCCCACACGAGTCGGTCCTTTTTTTCAATTGACAGCATAGGTACAGGGATATTGCATCATTTGAAGTACCGGACCACACGGGTGAAAAATGCCTTCCGTTCCCTCCAACACCGAAAATGGCAACTCTGCCAACGCCTGTCCCCACGCCACCAAATTCAACCAGACGGGGCTGAACGGCGAGGACAACGCCAATGGGGAAAGGAATTGGATTCGCCCCGATGCACCCAGCAAGTGCACATGGAAACTGGGTACCCCCCCCTCAGAGTCACCCCACTTCCACTATGAACCATCAAAATCACCTAACATTATGCCAAACATCCTGAAGAAGATTGGTGACACCCCTCTGGTCCGAATCAACAAGATCCCAAAGCTTTATGGACTCAAGTGTGAATTGTTGGCCAAGTGTGAGTTCTTCAATGCGGGCGGCAGCGTGAAGGACCGGATCAGTCTGCGGATGGTAGAGGATGCTGAGAGGGAAGGCATTCTAAAGCCAGGGGATACCATCATTGAACCAACGTCAGGAAACACGGGCATTGGATTGGCGCTGGCTGCTGCTGTTAAAGGCTATCGCTGCATCATCGTCATGCCTGAAAAAATGAGCATGGAAAAGGTGGACGTGCTGCGAGCTCTGGGGGCTGAGATTGTGAGGACACCCACTAGCGCACGCTTTGACTCCCCCGAGTCCCATTACCGCAATCCCAGCAACCCCCTGGCTCATTATGACACCACGGCCGAGGAGATTCTGCAGCAGTGTGATGGCAAGGTGGACATGCTGGTGGCTGGAGCTGGTACAGGTGGCACCATCACTGGCATCGCCCGCAAACTCAAGGAAAAGTGCCCTGATTGCAAGATTATCGGCGTGGATCCCGAGGGTTCAATACTGGCTGAACCAGAAGATTTGAATCGGACTGACAAGACCATGTATGAGGTGGAGGGCATCGGATACGATTTCATCCCCACGGTGCTGGACAGATCGGTTGTAGACCAGTGGACCAAGTCCAATGACGAGGAGTCATTTGCCATGTCCCGTATGCTAATCAAAGAAGAAGGCCTGCTCTGtgGTGGCAGCTCAGGCACAGCCATGGCGGCGGCCGTGAAGGTGGCCAAGGAGCTGAAAGAAGGGCAACGCTGCGTCGTCATCCTGCCAGACTCCATCCGCAACTACATGTCGAAGTTCCTGAGTGACTCATGGATGTACCAGAAAGGGTTCCTCAGGGAAGAGAACATGGTGACAAAGCCTTGGTGGTGGAATATGAAGGTCCAAGTGTTGAACTTGTCTGCGCCACTAACTGTACTGCCATCGGTCACCTGCCAGAACACCATTGAGATCCTGAAGGAGAAGGGTTTCGATCAGGCCCCGGTGGTCAATGACTCTGGGGTCATTTTGGGAATGATCACCCTAGGCAACATGCTTTCCTCAGTACTTGCAGGAAAAGTGCAGCCATCTGATCCAGTCAGCAAAGTTCTGTACAAACAGTTCAAAAAGATCCAGCTGCATGACAACCTTGGCAAACTATCCCGGATCCTCGAGATTGACCACTTCGCCCTTGTGGTCCATGAGCAGATTCAGTACTTTGCCGAAGGCTCATCCTGCAACAAGCAGATGGTGTTTGGCGTGGTGACAGCCATCGACCTCCTCAACTATGTCACAGCCAAAGAGAAGGAGCACGGCGACAACTAA

Function

NR:

description
PREDICTED: cystathionine beta-synthase-like isoform X1

GO:

id name namespace
GO:0019343 cysteine biosynthetic process via cystathionine biological_process
GO:0006535 cysteine biosynthetic process from serine biological_process
GO:0005737 cytoplasm cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0004122 cystathionine beta-synthase activity molecular_function

KEGG:

id description
K01697 CBS; cystathionine beta-synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014740 True 1787 mRNA 0.53 16 29400632 29421379

Neighbor

gene id symbol gene type direction distance location
AMCG00014741 LOC106586690,LOC106582147,LOC106575755 coding upstream 2411 29383488 ~ 29398221 (+)
AMCG00014737 NA coding upstream 79040 29307940 ~ 29321592 (+)
AMCG00014733 NA coding upstream 271590 29120951 ~ 29129042 (+)
AMCG00014734 NA coding upstream 289994 29096129 ~ 29110638 (+)
AMCG00014728 gsk3b,LOC107559500,LOC107721573,LOC107551994,LOC107715908 coding upstream 483998 28905901 ~ 28916634 (+)
AMCG00014736 cryaa coding downstream 10142 29431521 ~ 29437107 (+)
AMCG00014743 NA coding downstream 119152 29540531 ~ 29558701 (+)
AMCG00014746 rev1 coding downstream 167422 29588801 ~ 29614037 (+)
AMCG00014745 txndc9,LOC107568936,LOC107668903,LOC106586783 coding downstream 222397 29643776 ~ 29649810 (+)
AMCG00014747 NA coding downstream 231814 29653193 ~ 29657089 (+)
G72426 NA non-coding upstream 208354 29191971 ~ 29192278 (+)
G72415 NA non-coding upstream 240207 29157025 ~ 29160425 (+)
G72409 NA non-coding upstream 263279 29137129 ~ 29137353 (+)
G72354 NA non-coding upstream 409333 28989607 ~ 28991299 (+)
G72353 NA non-coding upstream 415056 28981122 ~ 28985576 (+)
G72767 NA non-coding downstream 1415457 30836836 ~ 30837169 (+)
G72768 NA non-coding downstream 1420181 30841560 ~ 30844670 (+)
G72769 NA non-coding downstream 1424783 30846162 ~ 30846421 (+)
G72783 NA non-coding downstream 1534526 30955905 ~ 30956284 (+)
G72789 NA non-coding downstream 1581993 31003372 ~ 31003788 (+)
AMCG00014738 NA other upstream 121483 29268329 ~ 29279149 (+)
AMCG00014739 NA other upstream 144278 29247875 ~ 29256354 (+)
AMCG00014729 NA other upstream 562722 28797049 ~ 28837910 (+)
G72175 LOC102776245 other upstream 1096559 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 1520832 27868703 ~ 27879800 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 422088 29843467 ~ 29846586 (+)
G72605 NA other downstream 430071 29851450 ~ 29851821 (+)
AMCG00014777 NA other downstream 1342972 30764351 ~ 30812287 (+)
G72785 fam160a2 other downstream 1556837 30978216 ~ 30978825 (+)
G72786 NA other downstream 1558191 30979570 ~ 30980252 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000337 cbsa coding NC_007112.7 CM002885.2 29068649 ~ 29093562 (+)