RNA id: AMCG00014740


Basic Information

Item Value
RNA id AMCG00014740
length 1787
RNA type mRNA
GC content 0.53
exon number 16
gene id AMCG00014740
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29400632 ~ 29421379 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTGATTGGAGGAGAGGAGCGCGCAGACACCCACGCCGTAGCCAATCAGCGCGCACTCCAAACAAGGCGAGCTCCGAAACGATTGGTCGCTCACTCCCACTGCAGCCCCACACGAGTCGGTCCTTTTTTTCAATTGACAGCATAGGTACAGGGATATTGCATCATTTGAAGTACCGGACCACACGGGTGAAAAATGCCTTCCGTTCCCTCCAACACCGAAAATGGCAACTCTGCCAACGCCTGTCCCCACGCCACCAAATTCAACCAGACGGGGCTGAACGGCGAGGACAACGCCAATGGGGAAAGGAATTGGATTCGCCCCGATGCACCCAGCAAGTGCACATGGAAACTGGGTACCCCCCCCTCAGAGTCACCCCACTTCCACTATGAACCATCAAAATCACCTAACATTATGCCAAACATCCTGAAGAAGATTGGTGACACCCCTCTGGTCCGAATCAACAAGATCCCAAAGCTTTATGGACTCAAGTGTGAATTGTTGGCCAAGTGTGAGTTCTTCAATGCGGGCGGCAGCGTGAAGGACCGGATCAGTCTGCGGATGGTAGAGGATGCTGAGAGGGAAGGCATTCTAAAGCCAGGGGATACCATCATTGAACCAACGTCAGGAAACACGGGCATTGGATTGGCGCTGGCTGCTGCTGTTAAAGGCTATCGCTGCATCATCGTCATGCCTGAAAAAATGAGCATGGAAAAGGTGGACGTGCTGCGAGCTCTGGGGGCTGAGATTGTGAGGACACCCACTAGCGCACGCTTTGACTCCCCCGAGTCCCATTACCGCAATCCCAGCAACCCCCTGGCTCATTATGACACCACGGCCGAGGAGATTCTGCAGCAGTGTGATGGCAAGGTGGACATGCTGGTGGCTGGAGCTGGTACAGGTGGCACCATCACTGGCATCGCCCGCAAACTCAAGGAAAAGTGCCCTGATTGCAAGATTATCGGCGTGGATCCCGAGGGTTCAATACTGGCTGAACCAGAAGATTTGAATCGGACTGACAAGACCATGTATGAGGTGGAGGGCATCGGATACGATTTCATCCCCACGGTGCTGGACAGATCGGTTGTAGACCAGTGGACCAAGTCCAATGACGAGGAGTCATTTGCCATGTCCCGTATGCTAATCAAAGAAGAAGGCCTGCTCTGtgGTGGCAGCTCAGGCACAGCCATGGCGGCGGCCGTGAAGGTGGCCAAGGAGCTGAAAGAAGGGCAACGCTGCGTCGTCATCCTGCCAGACTCCATCCGCAACTACATGTCGAAGTTCCTGAGTGACTCATGGATGTACCAGAAAGGGTTCCTCAGGGAAGAGAACATGGTGACAAAGCCTTGGTGGTGGAATATGAAGGTCCAAGTGTTGAACTTGTCTGCGCCACTAACTGTACTGCCATCGGTCACCTGCCAGAACACCATTGAGATCCTGAAGGAGAAGGGTTTCGATCAGGCCCCGGTGGTCAATGACTCTGGGGTCATTTTGGGAATGATCACCCTAGGCAACATGCTTTCCTCAGTACTTGCAGGAAAAGTGCAGCCATCTGATCCAGTCAGCAAAGTTCTGTACAAACAGTTCAAAAAGATCCAGCTGCATGACAACCTTGGCAAACTATCCCGGATCCTCGAGATTGACCACTTCGCCCTTGTGGTCCATGAGCAGATTCAGTACTTTGCCGAAGGCTCATCCTGCAACAAGCAGATGGTGTTTGGCGTGGTGACAGCCATCGACCTCCTCAACTATGTCACAGCCAAAGAGAAGGAGCACGGCGACAACTAA

Function

GO:

id name namespace
GO:0019343 cysteine biosynthetic process via cystathionine biological_process
GO:0006535 cysteine biosynthetic process from serine biological_process
GO:0005737 cytoplasm cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0004122 cystathionine beta-synthase activity molecular_function

KEGG:

id description
K01697 CBS; cystathionine beta-synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90544 lncRNA upstream 128114 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA upstream 128114 29270851 ~ 29272518 (+) False AMCG00014738
TU90536 lncRNA upstream 147927 29249246 ~ 29252705 (+) True AMCG00014739
TU90518 lncRNA upstream 208354 29191971 ~ 29192278 (+) True G72426
TU90507 lncRNA upstream 240207 29157025 ~ 29160425 (+) True G72415
TU90738 lncRNA downstream 422088 29843467 ~ 29846586 (+) True AMCG00014757
TU90938 lncRNA downstream 1415457 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 1420181 30841560 ~ 30844670 (+) True G72768
TU90941 lncRNA downstream 1424783 30846162 ~ 30846421 (+) True G72769
TU90963 lncRNA downstream 1534526 30955905 ~ 30956284 (+) True G72783
AMCG00014741 mRNA upstream 2411 29383488 ~ 29398221 (+) True AMCG00014741
AMCG00014737 mRNA upstream 79040 29307940 ~ 29321592 (+) True AMCG00014737
AMCG00014738 mRNA upstream 121483 29269638 ~ 29279149 (+) True AMCG00014738
AMCG00014739 mRNA upstream 144278 29247875 ~ 29256354 (+) False AMCG00014739
AMCG00014733 mRNA upstream 271590 29120951 ~ 29129042 (+) True AMCG00014733
AMCG00014736 mRNA downstream 10142 29431521 ~ 29437107 (+) True AMCG00014736
AMCG00014743 mRNA downstream 119152 29540531 ~ 29558701 (+) True AMCG00014743
AMCG00014746 mRNA downstream 167422 29588801 ~ 29614037 (+) True AMCG00014746
AMCG00014745 mRNA downstream 222397 29643776 ~ 29649810 (+) True AMCG00014745
AMCG00014747 mRNA downstream 231814 29653193 ~ 29657089 (+) True AMCG00014747
TU90214 other upstream 1096559 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1520832 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 1558761 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6544986 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 11126272 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 430071 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1342972 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 1556837 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 1558191 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 1568684 30990063 ~ 30996363 (+) True G72787

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000580 True 2253 mRNA 0.42 14 NC_007112.7 29070661 ~ 29092999 (+)