RNA id: TU90740


Basic Information

Item Value
RNA id TU90740
length 372
RNA type TUCP
GC content 0.44
exon number 1
gene id G72605
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29851450 ~ 29851821 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attacatatttcacaccaaaggaaaaacaaaaaacaatgtgtttgttcTGTAAAAGAagacagactgactgtattAGTACCTTCAGTGTCCTTTGCATttctacattaaacatttactacGCTTCAGTCTGTGTATCAAACAGAGATCCAAAGGCCTTGAAAGCCTCAGTGAAAGGCAGGGGTACCTTAAGTCGCTGGCAGACCTTGAGCACACGCAGCACATTTTTGCACACGTTATCAACAGATGTGTTTCCACGGACACAGGTGATGCCCAGAATCTGCACATCAGGGTCAGCCAGTGCCAGCATTATGGCCTGGGCATCATCCACACCACAGTCCACATCAACTAGCAGCTTCTTCACCATCTTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90738 lncRNA upstream 4864 29843467 ~ 29846586 (+) True AMCG00014757
TU90544 lncRNA upstream 578932 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA upstream 578932 29270851 ~ 29272518 (+) False AMCG00014738
TU90536 lncRNA upstream 598745 29249246 ~ 29252705 (+) True AMCG00014739
TU90518 lncRNA upstream 659172 29191971 ~ 29192278 (+) True G72426
TU90938 lncRNA downstream 985015 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 989739 30841560 ~ 30844670 (+) True G72768
TU90941 lncRNA downstream 994341 30846162 ~ 30846421 (+) True G72769
TU90963 lncRNA downstream 1104084 30955905 ~ 30956284 (+) True G72783
TU90969 lncRNA downstream 1151551 31003372 ~ 31003788 (+) True G72789
AMCG00014757 mRNA upstream 7373 29843590 ~ 29844077 (+) False AMCG00014757
AMCG00014754 mRNA upstream 21459 29787726 ~ 29829991 (+) True AMCG00014754
AMCG00014751 mRNA upstream 111807 29735891 ~ 29739643 (+) True AMCG00014751
AMCG00014752 mRNA upstream 117828 29708405 ~ 29733622 (+) True AMCG00014752
AMCG00014753 mRNA upstream 166791 29659544 ~ 29684659 (+) True AMCG00014753
AMCG00014761 mRNA downstream 241591 30093412 ~ 30094212 (+) True AMCG00014761
AMCG00014760 mRNA downstream 248165 30099986 ~ 30142954 (+) True AMCG00014760
AMCG00014778 mRNA downstream 310157 30161978 ~ 30172006 (+) True AMCG00014778
AMCG00014773 mRNA downstream 323246 30175067 ~ 30182397 (+) True AMCG00014773
AMCG00014776 mRNA downstream 345942 30197763 ~ 30211831 (+) True AMCG00014776
TU90214 other upstream 1547377 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1971650 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 2009579 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6995804 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 11577090 18271854 ~ 18274360 (+) True G71004
TU90928 other downstream 912530 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 1126395 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 1127749 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 1138242 30990063 ~ 30996363 (+) True G72787
TU91144 other downstream 1865297 31717118 ~ 31754930 (+) True G72925

Expression Profile