RNA id: AMCG00014760


Basic Information

Item Value
RNA id AMCG00014760
length 573
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00014760
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30099986 ~ 30142954 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAAGCACCTCAAACAGCCAACTACCTAACCAGGATTTGAGAGGGACCTATGTGTGCGGGAACCAGGGTAACAGGGACCATCTCCAGGCTAACGCCAAAGCCACCAAGGAGCTGAGCCCTGAAGACCAGCAGGAGCTGAGGAAGAAGATCAACaacagggagaggaagaggatgcAGGACCTGAATGTGGCCATGGATGCCCTGCGTGAAGTGATGGTCCCTTATTCGGCGGCCCACCAGCACGGAGCCCCAGGAAGAAAACTCTCTAAGATCTCCACGCTCCTCCTGGCCAGGAACTACATCCTCCTGCTGAGCTCCTCTCTTCAGGAAATGAGGAGGCTGCTGGGGGAGATCAGTGGGCCCGCACCAAGGCTTCTGTTGGCAGGGTGGCCCCTGTTCACCACCCCTGGGTCCCTGTTCCTTACCCCCGACTCCATCATGGCCAGCAAGTGCACTCTGCTGTCCCCAGAGGAACACCCTTACCCCCAGCTGCAGTGGTCGAGCGGAGGACAAATCTGCTCTTGCGaGGCTCTCGGTTTCATTACGGGTGCTCACCATTACATGATCTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90738 lncRNA upstream 253400 29843467 ~ 29846586 (+) True AMCG00014757
TU90544 lncRNA upstream 827468 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA upstream 827468 29270851 ~ 29272518 (+) False AMCG00014738
TU90536 lncRNA upstream 847281 29249246 ~ 29252705 (+) True AMCG00014739
TU90518 lncRNA upstream 907708 29191971 ~ 29192278 (+) True G72426
TU90938 lncRNA downstream 693882 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 698606 30841560 ~ 30844670 (+) True G72768
TU90941 lncRNA downstream 703208 30846162 ~ 30846421 (+) True G72769
TU90963 lncRNA downstream 812951 30955905 ~ 30956284 (+) True G72783
TU90969 lncRNA downstream 860418 31003372 ~ 31003788 (+) True G72789
AMCG00014761 mRNA upstream 5774 30093412 ~ 30094212 (+) True AMCG00014761
AMCG00014757 mRNA upstream 255909 29843590 ~ 29844077 (+) False AMCG00014757
AMCG00014754 mRNA upstream 269995 29787726 ~ 29829991 (+) True AMCG00014754
AMCG00014751 mRNA upstream 360343 29735891 ~ 29739643 (+) True AMCG00014751
AMCG00014752 mRNA upstream 366364 29708405 ~ 29733622 (+) True AMCG00014752
AMCG00014778 mRNA downstream 19024 30161978 ~ 30172006 (+) True AMCG00014778
AMCG00014773 mRNA downstream 32113 30175067 ~ 30182397 (+) True AMCG00014773
AMCG00014776 mRNA downstream 54809 30197763 ~ 30211831 (+) True AMCG00014776
AMCG00014767 mRNA downstream 98752 30241706 ~ 30250266 (+) True AMCG00014767
AMCG00014769 mRNA downstream 383039 30525993 ~ 30531499 (+) True AMCG00014769
TU90740 other upstream 248165 29851450 ~ 29851821 (+) True G72605
TU90214 other upstream 1795913 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 2220186 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 2258115 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 7244340 22855342 ~ 22855646 (+) True G71525
TU90928 other downstream 621397 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 835262 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 836616 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 847109 30990063 ~ 30996363 (+) True G72787
TU91144 other downstream 1574164 31717118 ~ 31754930 (+) True G72925

Expression Profile