RNA id: TU90941


Basic Information

Item Value
RNA id TU90941
length 260
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G72769
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30846162 ~ 30846421 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTCAGGCGCTGGAGGCGGGCGTTTAGATGGGAATATCACGCCCGCCTCTCGCGAGCTTTTCCGTTTCcccagctgaatgaagtagcccttggtccttttcttcaccatctcccaccactctatgggagaatcaaaaaggtccttcagggtcctccactcctcgaggcgtctgctaaaggtcttaataacacgagggtcatcgagcagagaggtgttgagcttccagaccccaggccccgaCTCCCGTGTGCTCGGAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90940 lncRNA upstream 1492 30841560 ~ 30844670 (+) True G72768
TU90938 lncRNA upstream 8993 30836836 ~ 30837169 (+) True G72767
TU90738 lncRNA upstream 999576 29843467 ~ 29846586 (+) True AMCG00014757
TU90544 lncRNA upstream 1573644 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA upstream 1573644 29270851 ~ 29272518 (+) False AMCG00014738
TU90963 lncRNA downstream 109484 30955905 ~ 30956284 (+) True G72783
TU90969 lncRNA downstream 156951 31003372 ~ 31003788 (+) True G72789
TU90976 lncRNA downstream 297002 31143423 ~ 31147877 (+) True AMCG00014786
TU90997 lncRNA downstream 431666 31278087 ~ 31282858 (+) False G72815
TU90999 lncRNA downstream 431666 31278087 ~ 31287434 (+) True G72815
AMCG00014777 mRNA upstream 33875 30805623 ~ 30812287 (+) True AMCG00014777
AMCG00014768 mRNA upstream 105018 30728363 ~ 30741144 (+) True AMCG00014768
AMCG00014774 mRNA upstream 135742 30700206 ~ 30710420 (+) True AMCG00014774
AMCG00014779 mRNA upstream 185567 30659601 ~ 30660595 (+) True AMCG00014779
AMCG00014772 mRNA upstream 236058 30594129 ~ 30610104 (+) True AMCG00014772
AMCG00014771 mRNA downstream 751 30847172 ~ 30851142 (+) True AMCG00014771
AMCG00014781 mRNA downstream 60748 30907169 ~ 30917566 (+) True AMCG00014781
AMCG00014784 mRNA downstream 177122 31023543 ~ 31027002 (+) True AMCG00014784
AMCG00014783 mRNA downstream 195470 31041891 ~ 31044741 (+) True AMCG00014783
AMCG00014786 mRNA downstream 299348 31145769 ~ 31146137 (+) False AMCG00014786
TU90928 other upstream 40421 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 994341 29851450 ~ 29851821 (+) True G72605
TU90214 other upstream 2542089 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 2966362 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 3004291 27835503 ~ 27841871 (+) True AMCG00014704
TU90965 other downstream 131795 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 133149 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 143642 30990063 ~ 30996363 (+) True G72787
TU91144 other downstream 870697 31717118 ~ 31754930 (+) True G72925
TU91344 other downstream 1696089 32542510 ~ 32561489 (+) True G73103

Expression Profile