RNA id: TU90969


Basic Information

Item Value
RNA id TU90969
length 417
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G72789
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31003372 ~ 31003788 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTGCATTGgcaatattttctatttattttctacaactGTGATTTTCGTGGGCAGTGTGTATCGTAAAGCAATCCTCTGTCACGTGTCCCCGACTGTCCCGGTCTCTAGGGCCATAAATACCCGATCCAAAACCACTGACCAGGGCAACGGTTATTGCTGCCCGTCCCTCTGATTTTCTTGATTGCTCGACTAACGTTTCTGATTCAAGATCACTCTCTTTTCGCAGCCATCTTACTCGAATTCCTCACTCACACCCTCACGCAGGGCGTTATGACGTCCTCCGGGAACCACTGCTCCACGCAGCACGTCTCCCCCGcccccttctccttctccttccccttcACTTCACTCCTCGTCCTCAAAGAAGCACGTTATCAAAGAGCAaaggtcgcgttcttgtagcgcagatttccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90963 lncRNA upstream 47088 30955905 ~ 30956284 (+) True G72783
TU90941 lncRNA upstream 156951 30846162 ~ 30846421 (+) True G72769
TU90940 lncRNA upstream 158702 30841560 ~ 30844670 (+) True G72768
TU90938 lncRNA upstream 166203 30836836 ~ 30837169 (+) True G72767
TU90738 lncRNA upstream 1156786 29843467 ~ 29846586 (+) True AMCG00014757
TU90976 lncRNA downstream 139635 31143423 ~ 31147877 (+) True AMCG00014786
TU90997 lncRNA downstream 274299 31278087 ~ 31282858 (+) False G72815
TU90999 lncRNA downstream 274299 31278087 ~ 31287434 (+) True G72815
TU91052 lncRNA downstream 458358 31462146 ~ 31463811 (+) True G72861
TU91067 lncRNA downstream 516558 31520346 ~ 31523187 (+) True AMCG00014793
AMCG00014781 mRNA upstream 85806 30907169 ~ 30917566 (+) True AMCG00014781
AMCG00014771 mRNA upstream 152230 30847172 ~ 30851142 (+) True AMCG00014771
AMCG00014777 mRNA upstream 191085 30805623 ~ 30812287 (+) True AMCG00014777
AMCG00014768 mRNA upstream 262228 30728363 ~ 30741144 (+) True AMCG00014768
AMCG00014774 mRNA upstream 292952 30700206 ~ 30710420 (+) True AMCG00014774
AMCG00014784 mRNA downstream 19755 31023543 ~ 31027002 (+) True AMCG00014784
AMCG00014783 mRNA downstream 38103 31041891 ~ 31044741 (+) True AMCG00014783
AMCG00014786 mRNA downstream 141981 31145769 ~ 31146137 (+) False AMCG00014786
AMCG00014787 mRNA downstream 237513 31241301 ~ 31264255 (+) True AMCG00014787
AMCG00014788 mRNA downstream 293962 31297750 ~ 31308262 (+) True AMCG00014788
TU90967 other upstream 7009 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 23120 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 24547 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 197631 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 1151551 29851450 ~ 29851821 (+) True G72605
TU91144 other downstream 713330 31717118 ~ 31754930 (+) True G72925
TU91344 other downstream 1538722 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 2360967 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 3235146 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 3776334 34780122 ~ 34780590 (+) True G73329

Expression Profile