RNA id: TU91608



Basic Information


Item Value
RNA id TU91608
length 469
RNA type TUCP
GC content 0.47
exon number 1
gene id G73329
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 34780122 ~ 34780590 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


agactctcttaaagggagtgctcctaatctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagactgTAGACctaatgggctacaagaccaaatggaagaaacacaaaataactgtcagtctccctcgatctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactatgccgtgaaggactgaaatcctgcagcgacgcaaggtccccctgctcaagaaagcacatgtttgccaacatctgaatgattcagaggagaactgggtgaaagtgttgtgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91606 lncRNA upstream 10164 34769583 ~ 34769958 (+) True G73327
TU91605 lncRNA upstream 26351 34753537 ~ 34753771 (+) True G73326
TU91600 lncRNA upstream 169710 34610180 ~ 34610412 (+) True G73321
TU91583 lncRNA upstream 329738 34450155 ~ 34450384 (+) True G73304
TU91576 lncRNA upstream 417174 34362707 ~ 34362948 (+) True G73297
TU91640 lncRNA downstream 298069 35078659 ~ 35078896 (+) True G73354
TU91642 lncRNA downstream 388359 35168949 ~ 35169206 (+) True G73356
TU91660 lncRNA downstream 473279 35253869 ~ 35256115 (+) True G73374
TU91667 lncRNA downstream 487054 35267644 ~ 35268081 (+) True G73380
TU91689 lncRNA downstream 610044 35390634 ~ 35412587 (+) True AMCG00014836
AMCG00014827 mRNA upstream 1001874 33697523 ~ 33778248 (+) True AMCG00014827
AMCG00014822 mRNA upstream 2011143 32758965 ~ 32768979 (+) True AMCG00014822
AMCG00014821 mRNA upstream 2023985 32734868 ~ 32756137 (+) True AMCG00014821
AMCG00014817 mRNA upstream 2116968 32653743 ~ 32663154 (+) True AMCG00014817
AMCG00014815 mRNA upstream 2382614 32396687 ~ 32397508 (+) True AMCG00014815
AMCG00014833 mRNA downstream 247267 35027857 ~ 35320982 (+) True AMCG00014833
AMCG00014835 mRNA downstream 590394 35370984 ~ 35382903 (+) True AMCG00014835
AMCG00014836 mRNA downstream 613720 35394310 ~ 35412072 (+) False AMCG00014836
AMCG00014834 mRNA downstream 683411 35464001 ~ 35474369 (+) True AMCG00014834
AMCG00014837 mRNA downstream 770567 35551157 ~ 35551807 (+) True AMCG00014837
TU91569 other upstream 540722 34238934 ~ 34239400 (+) True G73292
TU91511 other upstream 1414022 33364755 ~ 33366100 (+) True G73244
TU91344 other upstream 2218633 32542510 ~ 32561489 (+) True G73103
TU91144 other upstream 3025192 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 3783759 30990063 ~ 30996363 (+) True G72787
TU91622 other downstream 161421 34942011 ~ 34960447 (+) True G73343
TU91690 other downstream 610044 35390634 ~ 35394649 (+) False AMCG00014836
TU92227 other downstream 2737518 37518108 ~ 37518406 (+) True G73850
TU92541 other downstream 3651784 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 4030103 38810693 ~ 38811128 (+) True G74227

Expression Profile