RNA id: TU91583


Basic Information

Item Value
RNA id TU91583
length 230
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G73304
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 34450155 ~ 34450384 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGGGGTCTGGGGTTCCCCCCgaagaaaatctttttttttttttaatattggaaAATTCACTAATACATGGGATGAACTTCATGgattttttacaataatgtctAATAGTGCAATGACGGTCCTGGAGTAACATTCATTATTATGTCATAGGAACAACACCAACACAGGGATATCAGATCAGTCATCAATATTTGCTCCTTTTCTCACTCACCTCCATGTCACCTGCTC

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91576 lncRNA upstream 87207 34362707 ~ 34362948 (+) True G73297
TU91574 lncRNA upstream 156612 34293337 ~ 34293543 (+) True G73295
TU91560 lncRNA upstream 334451 34115346 ~ 34115704 (+) True G73285
TU91552 lncRNA upstream 422385 34007971 ~ 34027770 (+) True G73279
TU91542 lncRNA upstream 597131 33852676 ~ 33853024 (+) True G73269
TU91600 lncRNA downstream 159796 34610180 ~ 34610412 (+) True G73321
TU91605 lncRNA downstream 303153 34753537 ~ 34753771 (+) True G73326
TU91606 lncRNA downstream 319199 34769583 ~ 34769958 (+) True G73327
TU91640 lncRNA downstream 628275 35078659 ~ 35078896 (+) True G73354
TU91642 lncRNA downstream 718565 35168949 ~ 35169206 (+) True G73356
AMCG00014827 mRNA upstream 671907 33697523 ~ 33778248 (+) True AMCG00014827
AMCG00014822 mRNA upstream 1681176 32758965 ~ 32768979 (+) True AMCG00014822
AMCG00014821 mRNA upstream 1694018 32734868 ~ 32756137 (+) True AMCG00014821
AMCG00014817 mRNA upstream 1787001 32653743 ~ 32663154 (+) True AMCG00014817
AMCG00014815 mRNA upstream 2052647 32396687 ~ 32397508 (+) True AMCG00014815
AMCG00014831 mRNA downstream 240701 34691085 ~ 34931860 (+) True AMCG00014831
AMCG00014833 mRNA downstream 577473 35027857 ~ 35320982 (+) True AMCG00014833
AMCG00014835 mRNA downstream 920600 35370984 ~ 35382903 (+) True AMCG00014835
AMCG00014836 mRNA downstream 943926 35394310 ~ 35412072 (+) False AMCG00014836
AMCG00014834 mRNA downstream 1013617 35464001 ~ 35474369 (+) True AMCG00014834
TU91569 other upstream 210755 34238934 ~ 34239400 (+) True G73292
TU91511 other upstream 1084055 33364755 ~ 33366100 (+) True G73244
TU91344 other upstream 1888666 32542510 ~ 32561489 (+) True G73103
TU91144 other upstream 2695225 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 3453792 30990063 ~ 30996363 (+) True G72787
TU91608 other downstream 329738 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 491627 34942011 ~ 34960447 (+) True G73343
TU91690 other downstream 940250 35390634 ~ 35394649 (+) False AMCG00014836
TU92227 other downstream 3067724 37518108 ~ 37518406 (+) True G73850
TU92541 other downstream 3981990 38432374 ~ 38432861 (+) True G74114

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU43145 True 2391 lncRNA 0.41 3 NC_048565.1 36005053 ~ 36045196 (-)
bowfin (Amia calva) TU43145 True 455 lncRNA 0.43 2 CM030124.1 23118801 ~ 23120960 (-)