RNA id: TU91642



Basic Information


Item Value
RNA id TU91642
length 258
lncRNA type intronic
GC content 0.34
exon number 1
gene id G73356
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35168949 ~ 35169206 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gagtctctcattagtattgttagttggacatcaaataactacgcaggttagaatttatgtcaggtaacttctcgttatatatatatcagtctcatttacatttaggtgccgagaaagatcctatcattacttgttaccacaatttccttaactgattattattcaatgattaaggataggcagggccatcTATAATCCGgtgtctattaacttgtgtcaatttcagactaaacagttaaacaggaatgagaagatatc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91640 lncRNA upstream 90053 35078659 ~ 35078896 (+) True G73354
TU91606 lncRNA upstream 398991 34769583 ~ 34769958 (+) True G73327
TU91605 lncRNA upstream 415178 34753537 ~ 34753771 (+) True G73326
TU91600 lncRNA upstream 558537 34610180 ~ 34610412 (+) True G73321
TU91583 lncRNA upstream 718565 34450155 ~ 34450384 (+) True G73304
TU91660 lncRNA downstream 84663 35253869 ~ 35256115 (+) True G73374
TU91667 lncRNA downstream 98438 35267644 ~ 35268081 (+) True G73380
TU91689 lncRNA downstream 221428 35390634 ~ 35412587 (+) True AMCG00014836
TU91721 lncRNA downstream 302854 35472060 ~ 35476459 (+) True G73427
TU91732 lncRNA downstream 327991 35497197 ~ 35502434 (+) True G73431
AMCG00014831 mRNA upstream 237089 34691085 ~ 34931860 (+) True AMCG00014831
AMCG00014827 mRNA upstream 1390701 33697523 ~ 33778248 (+) True AMCG00014827
AMCG00014822 mRNA upstream 2399970 32758965 ~ 32768979 (+) True AMCG00014822
AMCG00014821 mRNA upstream 2412812 32734868 ~ 32756137 (+) True AMCG00014821
AMCG00014817 mRNA upstream 2505795 32653743 ~ 32663154 (+) True AMCG00014817
AMCG00014835 mRNA downstream 201778 35370984 ~ 35382903 (+) True AMCG00014835
AMCG00014836 mRNA downstream 225104 35394310 ~ 35412072 (+) False AMCG00014836
AMCG00014834 mRNA downstream 294795 35464001 ~ 35474369 (+) True AMCG00014834
AMCG00014837 mRNA downstream 381951 35551157 ~ 35551807 (+) True AMCG00014837
AMCG00014848 mRNA downstream 1126510 36295716 ~ 36297723 (+) True AMCG00014848
TU91622 other upstream 208502 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 388359 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 929549 34238934 ~ 34239400 (+) True G73292
TU91511 other upstream 1802849 33364755 ~ 33366100 (+) True G73244
TU91344 other upstream 2607460 32542510 ~ 32561489 (+) True G73103
TU91690 other downstream 221428 35390634 ~ 35394649 (+) False AMCG00014836
TU92227 other downstream 2348902 37518108 ~ 37518406 (+) True G73850
TU92541 other downstream 3263168 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 3641487 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 4167062 39336268 ~ 39475819 (+) True G74348

Expression Profile