RNA id: TCONS_00000580


Basic Information

Item Value
RNA id TCONS_00000580
length 2253
RNA type mRNA
GC content 0.42
exon number 14
gene id XLOC_000337
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29068649 ~ 29093562 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGGAACTATTGAGGAATAATGCCTTCAGTCCCCTCCAACAAAGAGAATGACACCTCTCCCTGCCCTATTTTGGGCAAAAACCTCAGTGGCACGAATAATGTAGATAAGAAGTTGGGTGCGGATGATGGAGACAGACCCCCACAGCTGAATAAAGAAATTGCCACTGCTGACCCTAAATGGATTCGTCCTGACCTGCCAAGCAGATGTACATGGAAACCAGGAATGTCTCATGAAAATTCCCCTCACACATACTTTCCCAGGACAAAAGCTGAGTGCATTCTACCCAACATATTGGGCAAGATTGGAGACACACCGCTGGTCCACATAAACAAGATCTCTAAGATATTTGGATTAAAGTGTGAACTTTTGGCAAAGTGTGAGTTCTTTAATGCTGGTGGTAGTGTGAAGGACCGTATTAGTCTGCGTATGGTGGAGGATGCAGAAAGGGAAGGCATTCTCAATCCTGGAGACACCATTATAGAGCCCACCTCTGGAAATACAGGTATTGGTCTTGCACTGGCTGCAGCGGTAAAGGGTTATCGCTGTATAATTGTTATGCCTGAGAAAATGAGCATGGAAAAGGTTGATGTGTTGAGAGCTTTGGGAGCAGAGATTGTCCGAACACCCACCAGTGCTCGGTTTGACTCCCCAGAGTCACATGTGGGAGTGGCTTGGCGCTTGAAAAATGAGATCCCTAACTCTCATATTCTGGACCAATATCGCAATCCCAGCAACCCCCTGGCTCATTATGACACCACTGCAGAGGAAATTCTGGAGCAATGTGATgGGAAAGTGGATATGCTGGTGGCAGGAGCTGGCACAGGTGGCACCATTACTGGCATCGCTCGGAAATTGAAGGAAAAGTGCCCAAATATTAAGATTGTCGCTGTGGACCCAGAGGGCTCAATCCTTGCTGAGCCTGATGAACTGAACCGAACAGATAAAAACCAGTATGAGGTGGAGGGCATTGGATATGACTTCATACCCACTGTTCTCGATAGATCTTTGGTTGACAAATGGTACAAATCCAAGGATGAGGAATCATTTGCCATGGCCCGAATGCTTATAAGAGATGAAGGGCTATTATGTGGTGGTAGTTCAGGCACTGCCATGGCAGCTGCAGTAAAATTTGCCAAAGAGCTGAAGGAAGGACAGCGGTGTGTTGTGATTTTGCCAGACTCAATTCGCAACTACATGTCTAAGTTCTTGAGTGATAAGTGGATGTTCCAGAAGGGCTTTCTAAGGGTGGAAGACATCATGGTGAATAAACCCTGGTGGTGGAATCTCAAACTACAAAGTTTAAACCTCTCTGCTCCACTTACTGTGCTGCCTACAGTCACATgccaaaaaactattaaaatcttGAAAGATAAGGGCTTTGACCAGGCACCTGTCGTAAATGAAGCTGGGTTGATTCTGGGTATGGTGACTCTGGGAAACATGCTTGCTTCTGTTCTAGCAGGAAAAGTCAAGCCTTCTGACCCCGTCAGCAAAGTGCTCTATAAACAGTTTAAGCAGATTCGTCTGACTGACAATATGGGAAAGTTGTCTCGGATCTTGGAAACTGATCACTTTGCCCTGGTGGTTCATGAGCAAATTCAATatcTTACAGATGGCTCCTCATCTCAAAAGCAAATGGTGTTTGGAGTGGTGACTGCCATTGATCTTCTCAACTTTGTGACTGCtcgagagaaaagagagagaactATGTCAGAAACAGCCGATGAATACTGAATGCTTTACATCCTGCTTCAGTCTGAATGTGATGCACTACCAAGATTCAACAATGGAGAAATAGATGTCATAAATTAGTTACATTTAAATTTCAGCATTAGGTCTGGTCTGCTTTTTACAACTTTATTTCTTGCTTATTTCTTTTCATCTTAAATTCAAAAGAATACAAAACATATGTAAACAAATCTAAAGTTACCTTGGAAAGCATCAGAACACTTCACTCTCACTTTAATTCAGCTCAGTCACATAGGGtcacattaggcacattcaaatcaagacttgaaacacatctgtttagctgcctttcctgaatgagcactgtgctacgtccgacagttTGCACTATGATGTCTTTTAtcacctgttttaacacattgtaaTCAGTTTGgatcatttttaattcttttaatcatttttattttatattttattttattcatgtttatgtaaagcactttgaaattCCATTGTGTATAGCatttgttatataaataaacttgccttgccttgcctaatcc

Function

GO:

id name namespace
GO:0071322 cellular response to carbohydrate stimulus biological_process
GO:0071326 cellular response to monosaccharide stimulus biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0071331 cellular response to hexose stimulus biological_process
GO:0071333 cellular response to glucose stimulus biological_process
GO:0070814 hydrogen sulfide biosynthetic process biological_process
GO:0050667 homocysteine metabolic process biological_process
GO:0019343 cysteine biosynthetic process via cystathionine biological_process
GO:0019344 cysteine biosynthetic process biological_process
GO:0019346 transsulfuration biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006535 cysteine biosynthetic process from serine biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process
GO:0001678 cellular glucose homeostasis biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0008238 exopeptidase activity molecular_function
GO:0008241 peptidyl-dipeptidase activity molecular_function
GO:0016829 lyase activity molecular_function
GO:0033293 monocarboxylic acid binding molecular_function
GO:0048037 obsolete cofactor binding molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004122 cystathionine beta-synthase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-367 Predicted to enable cystathionine beta-synthase activity. Predicted to be involved in cysteine biosynthetic process. Predicted to act upstream of or within cysteine biosynthetic process from serine and cysteine biosynthetic process via cystathionine. Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; digestive system; mesoderm; musculature system; and nervous system. Human ortholog(s) of this gene implicated in coronary artery disease; homocystinuria; hyperhomocysteinemia; malaria; and neural tube defect. Orthologous to human CBS (cystathionine beta-synthase).

Ensembl:

ensembl_id ENSDART00000192015

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000576 lncRNA upstream 166026 28903770 ~ 28904635 (+) True XLOC_000336
TCONS_00003080 lncRNA upstream 597248 28472199 ~ 28473413 (+) True XLOC_000335
TCONS_00000568 lncRNA upstream 1034513 28031697 ~ 28036148 (+) False XLOC_000333
TCONS_00000570 lncRNA upstream 1034513 28031708 ~ 28036148 (+) False XLOC_000333
TCONS_00000566 lncRNA upstream 1075608 27977389 ~ 27995053 (+) False XLOC_000332
TCONS_00000585 lncRNA downstream 81196 29174195 ~ 29180648 (+) True XLOC_000340
TCONS_00000588 lncRNA downstream 85146 29178145 ~ 29179934 (+) False XLOC_000341
TCONS_00000587 lncRNA downstream 85146 29178145 ~ 29179934 (+) False XLOC_000341
TCONS_00000591 lncRNA downstream 90973 29183972 ~ 29185269 (+) True XLOC_000342
TCONS_00000595 lncRNA downstream 218528 29311527 ~ 29312559 (+) True XLOC_000346
TCONS_00000575 mRNA upstream 875394 28089703 ~ 28195267 (+) True XLOC_000334
TCONS_00000574 mRNA upstream 1023419 28031892 ~ 28047242 (+) True XLOC_000333
TCONS_00000571 mRNA upstream 1024664 28031708 ~ 28045997 (+) False XLOC_000333
TCONS_00000581 mRNA downstream 3882 29096881 ~ 29100923 (+) True XLOC_000338
TCONS_00000582 mRNA downstream 47885 29140884 ~ 29164911 (+) False XLOC_000339
TCONS_00000583 mRNA downstream 47982 29140981 ~ 29142498 (+) False XLOC_000339
TCONS_00000584 mRNA downstream 69479 29162478 ~ 29164350 (+) True XLOC_000339
TCONS_00000586 mRNA downstream 85118 29178117 ~ 29179930 (+) False XLOC_000341
TCONS_00000565 other upstream 1068724 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other upstream 1075050 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000557 other upstream 1339681 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000518 other upstream 2951037 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000495 other upstream 3950456 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000608 other downstream 738760 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000617 other downstream 1072954 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000618 other downstream 1134392 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000628 other downstream 1862926 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000632 other downstream 1964241 31057240 ~ 31063850 (+) True XLOC_000367

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00014740 True 1787 mRNA 0.53 16 CM030128.1 29400632 ~ 29421379 (+)