AMCG00014761 (olig3)


Basic Information

Item Value
gene id AMCG00014761
gene name olig3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30093412 ~ 30094212 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014761
ATGGATTCCGATGCCAGTCTAGTGTCCAGCAGGCCATCGTCTCCCGAAGTGGATGACATTTTCCTGTCCAGCGTAAGAAAGACCGCCGGCTTTTCGGGCACCGTATCGTCCACCCAGAGCGACTCTCCTCCGGGCTTAAGCGCCGACGCCCTGTCCGCCGCCAGCCCCAGCGACGACGACTGCCCGCTGAAAATGCTGTCCAAGAAGGACCGCAAACTGCTCTCGGAGTCGGAGCTGCAGCAGATGCGGCTGAAGATCAACAGCCGGGAGAGGAAGCGGATGCACGACCTGAACATCGCCATGGACGGCTTGCGGGAGGTGATGCCCTACGCGCACGGTCCCTCGGTCAGGAAGCTCTCCAAGATCGCCACGCTGCTCCTGGCCCGCAACTACATCCTGATGCTGAGCAACTCGCTGGAGGAGATGAAGCGGCTCGTCAGTGAGATCTACGGGGGTCACCACGGCGGCTTTCACCCTTCGGCTTGCGGGACGATGGCGCATACGGGACCTTTGCCGGGCCATCCGGGTTCTCACTCCTCGCACCCGGTTCACCACCCGATCATACCGCCCGCCGTGTCGAGCGCATCGCTGTCTGGACCAGGTATCTCGGCGGTGACTTCAGTCAGACCCCACCACGGACTCCTGAAATCTCCTCCCGCCGGCGCAGGTCCCCTCGGCGGCAGCTTTCAGCACTGGGGCGCGGGGATGCCCTGCCCGTGTAGTATGTGCCAAGTGCCCCCTCCGCACGTTTCCAGCATGACTTCTGTGAGCATGCCAAGGCTAACTACTGACTCGAAATGA

Function

symbol description
olig3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and spinal cord motor neuron cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including brain; neural plate; neural tube; posterior neural keel; and presumptive diencephalon. Orthologous to human OLIG3 (oligodendrocyte transcription factor 3).

NR:

description
PREDICTED: oligodendrocyte transcription factor 3

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0001764 neuron migration biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0007400 neuroblast fate determination biological_process
GO:0007403 glial cell fate determination biological_process
GO:0021742 abducens nucleus development biological_process
GO:0021754 facial nucleus development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014761 True 801 mRNA 0.62 1 30093412 30094212

Neighbor

gene id symbol gene type direction distance location
AMCG00014754 mgat4a coding upstream 263421 29787726 ~ 29829991 (+)
AMCG00014751 NA coding upstream 353769 29735891 ~ 29739643 (+)
AMCG00014752 NA coding upstream 359790 29708405 ~ 29733622 (+)
AMCG00014753 NA coding upstream 408753 29659544 ~ 29684659 (+)
AMCG00014747 NA coding upstream 436323 29653193 ~ 29657089 (+)
AMCG00014760 NA coding downstream 5774 30099986 ~ 30142954 (+)
AMCG00014778 NA coding downstream 67766 30161978 ~ 30172006 (+)
AMCG00014773 NA coding downstream 80855 30175067 ~ 30182397 (+)
AMCG00014776 NA coding downstream 103551 30197763 ~ 30211831 (+)
AMCG00014767 NA coding downstream 147494 30241706 ~ 30250266 (+)
G72426 NA non-coding upstream 901134 29191971 ~ 29192278 (+)
G72415 NA non-coding upstream 932987 29157025 ~ 29160425 (+)
G72409 NA non-coding upstream 956059 29137129 ~ 29137353 (+)
G72354 NA non-coding upstream 1102113 28989607 ~ 28991299 (+)
G72353 NA non-coding upstream 1107836 28981122 ~ 28985576 (+)
G72767 NA non-coding downstream 742624 30836836 ~ 30837169 (+)
G72768 NA non-coding downstream 747348 30841560 ~ 30844670 (+)
G72769 NA non-coding downstream 751950 30846162 ~ 30846421 (+)
G72783 NA non-coding downstream 861693 30955905 ~ 30956284 (+)
G72789 NA non-coding downstream 909160 31003372 ~ 31003788 (+)
G72605 NA other upstream 241591 29851450 ~ 29851821 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other upstream 246826 29843467 ~ 29846586 (+)
AMCG00014738 NA other upstream 814263 29268329 ~ 29279149 (+)
AMCG00014739 NA other upstream 837058 29247875 ~ 29256354 (+)
AMCG00014729 NA other upstream 1255502 28797049 ~ 28837910 (+)
AMCG00014777 NA other downstream 670139 30764351 ~ 30812287 (+)
G72785 fam160a2 other downstream 884004 30978216 ~ 30978825 (+)
G72786 NA other downstream 885358 30979570 ~ 30980252 (+)
G72787 NA other downstream 895851 30990063 ~ 30996363 (+)
AMCG00014786 nhlh2,LOC106574539,LOC107739819,LOC105019883 other downstream 1049211 31143423 ~ 31147877 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037957 olig2 coding NC_007120.7 CM002893.2 32751428 ~ 32753535 (-)
grasscarp (Ctenopharyngodon idella) CI01000009_02300395_02301213 OLIG2 coding CI01000009 null 2300109 ~ 2301637 (-)
rainbow trout (Oncorhynchus mykiss) G1815615 LOC106582489 unknown NC_048586.1 CM023240.2 45838750 ~ 45840982 (-)