AMCG00015471


Basic Information

Item Value
gene id AMCG00015471
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9878459 ~ 9896512 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015471
atgCAGACCTCCAATACTCAGTGGTGCCAGCAGGGGGGACGGGCGCTCCTCCACCCGCTGACCTCCGAAAGGAGCGGGGATCCTGGGCCTGCACCGCACCCACTCCAGGAAGACCTGGGGCAGGACGCCACCCACCCGCCAGACGCCCTCCTGTCCATCCAATGCCTTCTCAGCTACTGGAGAGGGGATCCTGACCGGGGCCCGGAAGGGATGATGGGCTGTGGCATTGGAGAGGGGGGTGGAGCCTGTGAGCCCCTGGGGGCAGGGGGGGAGACCCCGCAGTGGGCGGCCGGCTTTCTGGGTCCGCAGGCAGAAAAATCGGGGCCTGGGAAGAACTCGGCCCAGATAAAGACCGAATTCAACCTAGAGAGGGAATATCTGATGGAGCTCCcactgcagtgcattctgggctCTGCACAGGGCAGGACTGAGCAGACTGAGCACATTGAAACAGAGCAGACAGGATCTGCTTCAGAGCCCATGTGTGTGAAGCAGGAGAGCTCAGATTCTGACCAGATAAAAACAGAGCAAGACTTTAAACCCGAGCCCGCGTCTGTGAAGCAGGAGAGCTCAGATTGGGAGGAGAGACAGGAGCGTGGAGGAGACTGTCCCCAGATAACGACTGAGTGTGAACTGGAGCCTGTGGACAGCAAGGACCCCCTGCTGCACTGGGAGATGGACTCTGGACAGGGCAGCACTGAGCAAACCGAGGATCCAGACTTTGCTGCTGAGCCCAAGTCTGTGAAGCAGGAGAGCTCAGACTGGGCTGTCTGTTCTCTGCAGGAGTCTGGAGGAGACTGTCCCCAGATAAAGACTGAGAGAGAGCAAGTCAATCTGGAGCCTCTGGACACCAAGGAGTGCCTTGTTCCCCTGACCTCTGGACAGGGCAGCAGTGAGCAGACTGGACTCCAGACTGACCAGATAAAAACAGAGCAAGACTTTAAACCCGAGCCCATGTGTGTGAAGCAGGAGAGCTCAGATTGGGAGGAGAGACAGGAGTGTCGAGGAGACTGTCCCCAGATAACGACTGAGTGTGAACTGGAACCTGTGGACAGCAAGGACCCCCTGCTGCACTGGGAGATGGACAGGGTGGCACTGAGCAGACAGGGTGGCAGCAGCCGGCAGACTGGACTCCAGACTGACCAGAGCAACACTGAAGAGAGACCCTCCAGGCCTGAACCTATGTTTGTTAAAGTTGAGAGTGCAGGCTGGGCAACTGGCTCCTCACTGCTAGAGAAGACTGCTGGAGGAGACTGTCCCCAGATAAAGACTGAATGTGAACTGGAGCCTGTGGACAGCAAGGAGCCCCTTGAGCCCCTGGCCTCTAGACAAGGCAGCGGTGAGCAGACTGGACTCCAGACTGACCAGATAAAAACAGAGCAAGACTATAAACTCGAGCCCATGTGTGTGAAGCAGGAGAGCTCAGACTGGGCCGCCTGTTCACTGCAGGAGTCCAAAGGAGACTGTCTCCAGATAAAGACTGAGAGACGGCAAGTCAAGATGGAGCCTTGCTCGGAGACAGGCTCTGGACAGGGCAGCAGCAGCCAGCAGCAGACTGGACTCCAGATTGACCAGATTGAGGAAGAGCAGCAAGGCCTCAGCCCTGAACTCCTACTTAATGAGCAGCGGACCCCAGACATGGGGGCTGTCTCTGCCCAGGGGCTCCTTTCACAGGCGCCCCAAATCACACCTGGGTTCCTACAGGGGAATTGGCCTGTTCCCTCTCCGCCAGCCCCAGGttccacttccacttccacttctCCCCTCcacttctcctccctcctctctttgATTGCCAAAGCCCTGCCACCAACCCTTCCTGCACCTACTCCCGCCCCACTCCTGCCCATCCAGGCTCCGTCCACCCCCCTGCTCATGGCCATCTCCCTgctgtcccccaccccccctgtGGTGTTCCCCTGCAATCAGTGTAGCAAGAGTTTCATCAGTGCTGCCACCCTGCAGGCCCACCGTGCACGTCACCAGCCCGCCAGTCTGCCATGTGTGTGGGTGAGAGTCAccagggggaggggaggagtgGAAGGAGGCGCAGAagGAGGCAGTGGGAGGCTGTTGGCACTGTCCGAGGAGATAAAGAAGCAGCAGGACATGTATTTGAAGTTGCTGCAGATTGCCAGCACCTGCAGCGGCTGCCACAGGGAGTTCAGTTCCATCCCAGCCTTGCAGGAGCACCAGCGATCGGGTCGGGATGGGGAGCCCAAGCCCTGGAAGTGCTGCCAGTGCCCCAGCACTTTCACGGTGGAGGGGCGGCTGCGGCACCACCAGAACATCCATGGCCCGGCCTGCCTCGAGTGCCCCGAGTGCGGCCGCAAAGACAGAAAGCTGAATGACACCTATAGCACACTGAAGGGTGCAAAAAGCGGAGCGAGAAGTGGCCGAATAGCGGCTAACGGGACCGGGGCAATTCCGCAACAAGATGACGCCGTCTTCCTCGCAGagagcaggcagggaggtccGCGGCTGGCCCTGCTGGGACGACGGCCGGTGAGACCGGGATCTGACGCCACTGACTTTACCCAACTGGAACTCTTGCCGGGGCAGAAACCGAGATCGGTATTGGCCATCCCGCAGTGGGCAGCTGAGGGGCTGTTTACGCCCGGGCGGCGGTACCGTGAGCGCTGCTCCCCCAGTACTATGAGTGCGAAGCGAGGCAACTGGGGAGTCGCTGTACCCGCAAATAATACGACCCCCGCGTTTAGTAATAGTAGTACCAGTCACGGCTCTGGGAGCGGGAGCAGTAAGCGGAAACAACCCGTGCCCAGCCTGCTGACGGCTGCCAGGGGGGACAGGCCAGAGGTCCAGGCGGCGAGGGGCGGCATGAGCGTCTCGGCGTCCTTCCTGCGAGACCGGCTCGCCCCGACCATCCAGAGCACCCTGGCCGCCGCGGTGGACTCCCTGCTGGGGGAAGTCGCACGGGTGGTGGGCGGCAGGATGGCCGAGGTGCAGCTGGAGATGGAGTCGAGGGAGCGGGAGAACGAGAGCCTACGGCTGCGGCTGGAGATCTCGGAGGGCGAGCTGGAGACGCTGCGGGAGTGCCTGAGCAGCGCCCAGCGCTTCATCGACCAGCTGCCCTTCCCGGGCGGCGGGGGACAGGCCACCCACGTTTCCACCGGACCGCTGCCCAGCCCCGGCGTGGCGAGCCAGGATTGCGCCCCCTTCTTCTGCGAGCGCCATGCGGCCGACCCGCCGGCGGGCTGTCACGACACCGGCTGCCTCCCCGCCGCGCTGCCCGGCTGCTCCCCGGACCTGGCGGGCTCCCTTGGCGACCCGCTGCCGGACTTCGGCTCTGCAGAGGATCTGAAGGACTGCCACCTGTCCATCCAGGCCGACGGCACAGTCACCAACCACGACCTGCTGGACTCGCTCGCCGCCCCCGGCTCTCCGATGGGCTGGTCCGAGCAAGGCTGGTTCCGCTGGCGAAGAGGTGCCGGACTCGCCCGGCCGCGGCTCGGTGACGGGCGGACAGCGCGGCTGCCTCGGCTGACCGAGCGAAGCCCTCCGTGCGATTGTCGCCGCCTCCTCCCCGCCGAGCCTCTCCACAGCGGCCGGGGAGGCAGGGGAAGCGGCTCGGGGATAGCGGCGCTGGGCGAGGTGCTGCGCCTCCTGGGCGGGAGGCTGGCGGGGCTGCAGTGGGAGGTGGATCGGCGGCAGCGGGAGGTGGACCGGCtgaagctgcagctgcagctgtccGAGGGGGTGATGCAGGCCGCccggggggaggtggggggcgTGGTGGGCATTGCTGTGGTGGGAGGTGGCCGAGTTGCCCGGCACAGCCCCCCATCCTCtccaccaccccctccctcccctacAACCAGGTCCCTGCTTCGCTGTAGGGGGGGAGGCAGTTTGGGATCAGAGGGATCAGCGGGGTCCCCCAAAAGCCACCCTGCACGAGCCCCCGCCGTGCTGATCAGGAGATCTGGGGACGGAGTGCGGGGGAAGAGCAAGTGGGTCATCAAAGGGGTAGAATCAGATGACGTCAgtgcggaggaggaggagcagacgCAGAGAGGGGGCGCCGCGGGGGGCCAGGGCCGGAGCTCGCGGGGGGACGCAGTGCTGGGCGGGACGGGACTGGGGCCCGGGTTCGAGATCAAGCAGGAGCAGCCGACCGGGCGGGTGGCGGTGGCGGGCGGGGAGTGCGAGCTGACGGCGCGGAGCGTGGGGGAGCTGGGCTACATCCatgtggtggaggaggaggaggcagcggGCCCTCGCACACGCAGCCGCCGTCCTGCCGCCACACGCAAGCTCGGGAACCAGCCCCCGACCGGAGCCCTGCACACGCACACGGCCCTGAATGGAGaagcagggggaggggggctgaTTGGTGGCCCcaaggaggaggtggaggaggtggaggaggtggCCACTGGAGGAGGCCGGGGTGGGTCAGGGGGGCGTGGGCAGGGGCTGCCTGGGAAGGCGGGGGCTTTGACATCAAGAGAGGGGCCAACGGTGACGGCAGCTGTGGGAGCGCAGGGGAGACGCACTGCGCCGACTGTGGCTGCCGGCAGAGCGCAAGGAGGAGGCGGCGGAGGAGGGACGCCGCCCCACCACGCGCCCACCTACTCGCACTTGCactctcagcagcagcagcagcagcaggccccCCCCGGGTATAGTCTGTGGGCaccagaggaagaggaggaggaagaggacatGAGGACCCGCCCCCCCAGCGGGCCTGTGCTAGTCTTTTGTCGGCCAGTCCAGTGGCTGAGTCAGACGCTgtgtgggaggaggaggagggaaagagagagggggagaggagaaggagaagCAACGGTGTTGGCAGCAGCCCAGGGACCGCGGCTGGCGCGCCTGTGCCATGGTGCCACAGGAGTGAGCCGTTCTGCCCACGACAGGAAGACAGTCTGTGAGAGCAGAGGGAATCCCGGTGGGCTGCAACCCCTGCACCCCACCCTGCCTCTTCATACCATCAGAGACAACAAGAAGATATGA
>TU122391
cctcttCAGAATCCCGGTGGGCTGCAACCCCTGCACCCCACCCTGCCTCTTCATACCATCAGAGACAACAAGAAGATATGATATGAAAGCTCCAATAAAAAAGATTCccgaagcaaaaaaaaacaaaacgacaaacCAACCCAAAGAAAAGAACAGGAGGCATTAGGATGGCTCTCATGCGTCTCCATTCGTTTGTGTTTTGTCACTTGTCCTTTTTGGCCGCTACACATGAAACGGCATCCCCAAGTCCTGGACTGTAATGCCTCCTCTGtgattacaaaacatttaaaaattaaaataaaatcgaaTCCACATAAcatctaataaaataattaaaacaaagagtacaaaaaaaatgtaataataattcataattagaATAGTATATTCAAAGTGAGAAGACAAGCCGTTATCAGGAACAAGGAAACTTGTTACTATTGATCAGGAGACGAAGACTGCATGACCGACTGATCGGTCATTTGATTGATTAAGTGAAGAGTATTTCCCCCAAAAGTTCAGTACAGTTATGTctcaatctgtatttttttttcccatgggGGGGCAATTCCAAAGGGCCCCCTGTAGCTCAGTCTTGAGGGTTCTGGAAACATTGCTGGCAGTGTTTGTTGAGTCAGTATTGGGGGGGGTGTCTGTAGGTCTCTCCAAGTTTACTGATTTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015471 True 4989 mRNA 0.65 12 9879060 9896512
TU122391 False 682 lncRNA 0.40 1 9878459 9879140

Neighbor

gene id symbol gene type direction distance location
AMCG00015469 NA coding downstream 1945 9871748 ~ 9876514 (-)
AMCG00015454 NA coding downstream 108789 9756195 ~ 9769670 (-)
AMCG00015453 NA coding downstream 139144 9718458 ~ 9739315 (-)
AMCG00015452 rab1ba,LOC100695098,LOC103027853,LOC103373258,LOC101478491,LOC103148874,LOC107679256,LOC105022126 coding downstream 160379 9712438 ~ 9718080 (-)
AMCG00015451 NA coding downstream 187120 9686534 ~ 9691339 (-)
AMCG00015470 NA coding upstream 3160 9899672 ~ 9909434 (-)
AMCG00015477 NA coding upstream 100551 9997063 ~ 10003088 (-)
AMCG00015478 NA coding upstream 106624 10003136 ~ 10004260 (-)
AMCG00015486 NA coding upstream 187276 10083788 ~ 10100629 (-)
AMCG00015485 NA coding upstream 213883 10110395 ~ 10111184 (-)
G98012 NA non-coding downstream 172428 9705727 ~ 9706031 (-)
G98006 NA non-coding downstream 196777 9681165 ~ 9681682 (-)
G97861 NA non-coding downstream 349306 9114016 ~ 9529153 (-)
G97906 NA non-coding downstream 494335 9383508 ~ 9384124 (-)
G97860 NA non-coding downstream 768409 9094155 ~ 9110050 (-)
G98126 NA non-coding upstream 33050 9929562 ~ 10017869 (-)
G98138 NA non-coding upstream 40564 9937076 ~ 9938322 (-)
G98163 NA non-coding upstream 129602 10026114 ~ 10075893 (-)
G98211 NA non-coding upstream 210721 10107233 ~ 10165397 (-)
G98216 NA non-coding upstream 276589 10173101 ~ 10222525 (-)
G98094 NA other downstream 38949 9837502 ~ 9839510 (-)
AMCG00015460 NA other downstream 62993 9808818 ~ 9815466 (-)
G97897 NA other downstream 522727 9353217 ~ 9355732 (-)
AMCG00015419 klc2,LOC107747958,LOC107728029,LOC106578016 other downstream 694053 9174843 ~ 9184406 (-)
AMCG00015415 NA other downstream 722012 9152218 ~ 9156447 (-)
AMCG00015468 NA other upstream 77444 9973956 ~ 9986628 (-)
AMCG00015479 NA other upstream 122252 10018764 ~ 10026019 (-)
AMCG00015497 NA other upstream 292330 10188842 ~ 10193858 (-)
AMCG00015493 zbtb3,LOC107602571 other upstream 299052 10195564 ~ 10198654 (-)
G98269 taf6l other upstream 391514 10288026 ~ 10340868 (-)

Expression


Co-expression Network