RNA id: AMCG00015471


Basic Information

Item Value
RNA id AMCG00015471
length 4989
RNA type mRNA
GC content 0.65
exon number 12
gene id AMCG00015471
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9878459 ~ 9896512 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgCAGACCTCCAATACTCAGTGGTGCCAGCAGGGGGGACGGGCGCTCCTCCACCCGCTGACCTCCGAAAGGAGCGGGGATCCTGGGCCTGCACCGCACCCACTCCAGGAAGACCTGGGGCAGGACGCCACCCACCCGCCAGACGCCCTCCTGTCCATCCAATGCCTTCTCAGCTACTGGAGAGGGGATCCTGACCGGGGCCCGGAAGGGATGATGGGCTGTGGCATTGGAGAGGGGGGTGGAGCCTGTGAGCCCCTGGGGGCAGGGGGGGAGACCCCGCAGTGGGCGGCCGGCTTTCTGGGTCCGCAGGCAGAAAAATCGGGGCCTGGGAAGAACTCGGCCCAGATAAAGACCGAATTCAACCTAGAGAGGGAATATCTGATGGAGCTCCcactgcagtgcattctgggctCTGCACAGGGCAGGACTGAGCAGACTGAGCACATTGAAACAGAGCAGACAGGATCTGCTTCAGAGCCCATGTGTGTGAAGCAGGAGAGCTCAGATTCTGACCAGATAAAAACAGAGCAAGACTTTAAACCCGAGCCCGCGTCTGTGAAGCAGGAGAGCTCAGATTGGGAGGAGAGACAGGAGCGTGGAGGAGACTGTCCCCAGATAACGACTGAGTGTGAACTGGAGCCTGTGGACAGCAAGGACCCCCTGCTGCACTGGGAGATGGACTCTGGACAGGGCAGCACTGAGCAAACCGAGGATCCAGACTTTGCTGCTGAGCCCAAGTCTGTGAAGCAGGAGAGCTCAGACTGGGCTGTCTGTTCTCTGCAGGAGTCTGGAGGAGACTGTCCCCAGATAAAGACTGAGAGAGAGCAAGTCAATCTGGAGCCTCTGGACACCAAGGAGTGCCTTGTTCCCCTGACCTCTGGACAGGGCAGCAGTGAGCAGACTGGACTCCAGACTGACCAGATAAAAACAGAGCAAGACTTTAAACCCGAGCCCATGTGTGTGAAGCAGGAGAGCTCAGATTGGGAGGAGAGACAGGAGTGTCGAGGAGACTGTCCCCAGATAACGACTGAGTGTGAACTGGAACCTGTGGACAGCAAGGACCCCCTGCTGCACTGGGAGATGGACAGGGTGGCACTGAGCAGACAGGGTGGCAGCAGCCGGCAGACTGGACTCCAGACTGACCAGAGCAACACTGAAGAGAGACCCTCCAGGCCTGAACCTATGTTTGTTAAAGTTGAGAGTGCAGGCTGGGCAACTGGCTCCTCACTGCTAGAGAAGACTGCTGGAGGAGACTGTCCCCAGATAAAGACTGAATGTGAACTGGAGCCTGTGGACAGCAAGGAGCCCCTTGAGCCCCTGGCCTCTAGACAAGGCAGCGGTGAGCAGACTGGACTCCAGACTGACCAGATAAAAACAGAGCAAGACTATAAACTCGAGCCCATGTGTGTGAAGCAGGAGAGCTCAGACTGGGCCGCCTGTTCACTGCAGGAGTCCAAAGGAGACTGTCTCCAGATAAAGACTGAGAGACGGCAAGTCAAGATGGAGCCTTGCTCGGAGACAGGCTCTGGACAGGGCAGCAGCAGCCAGCAGCAGACTGGACTCCAGATTGACCAGATTGAGGAAGAGCAGCAAGGCCTCAGCCCTGAACTCCTACTTAATGAGCAGCGGACCCCAGACATGGGGGCTGTCTCTGCCCAGGGGCTCCTTTCACAGGCGCCCCAAATCACACCTGGGTTCCTACAGGGGAATTGGCCTGTTCCCTCTCCGCCAGCCCCAGGttccacttccacttccacttctCCCCTCcacttctcctccctcctctctttgATTGCCAAAGCCCTGCCACCAACCCTTCCTGCACCTACTCCCGCCCCACTCCTGCCCATCCAGGCTCCGTCCACCCCCCTGCTCATGGCCATCTCCCTgctgtcccccaccccccctgtGGTGTTCCCCTGCAATCAGTGTAGCAAGAGTTTCATCAGTGCTGCCACCCTGCAGGCCCACCGTGCACGTCACCAGCCCGCCAGTCTGCCATGTGTGTGGGTGAGAGTCAccagggggaggggaggagtgGAAGGAGGCGCAGAagGAGGCAGTGGGAGGCTGTTGGCACTGTCCGAGGAGATAAAGAAGCAGCAGGACATGTATTTGAAGTTGCTGCAGATTGCCAGCACCTGCAGCGGCTGCCACAGGGAGTTCAGTTCCATCCCAGCCTTGCAGGAGCACCAGCGATCGGGTCGGGATGGGGAGCCCAAGCCCTGGAAGTGCTGCCAGTGCCCCAGCACTTTCACGGTGGAGGGGCGGCTGCGGCACCACCAGAACATCCATGGCCCGGCCTGCCTCGAGTGCCCCGAGTGCGGCCGCAAAGACAGAAAGCTGAATGACACCTATAGCACACTGAAGGGTGCAAAAAGCGGAGCGAGAAGTGGCCGAATAGCGGCTAACGGGACCGGGGCAATTCCGCAACAAGATGACGCCGTCTTCCTCGCAGagagcaggcagggaggtccGCGGCTGGCCCTGCTGGGACGACGGCCGGTGAGACCGGGATCTGACGCCACTGACTTTACCCAACTGGAACTCTTGCCGGGGCAGAAACCGAGATCGGTATTGGCCATCCCGCAGTGGGCAGCTGAGGGGCTGTTTACGCCCGGGCGGCGGTACCGTGAGCGCTGCTCCCCCAGTACTATGAGTGCGAAGCGAGGCAACTGGGGAGTCGCTGTACCCGCAAATAATACGACCCCCGCGTTTAGTAATAGTAGTACCAGTCACGGCTCTGGGAGCGGGAGCAGTAAGCGGAAACAACCCGTGCCCAGCCTGCTGACGGCTGCCAGGGGGGACAGGCCAGAGGTCCAGGCGGCGAGGGGCGGCATGAGCGTCTCGGCGTCCTTCCTGCGAGACCGGCTCGCCCCGACCATCCAGAGCACCCTGGCCGCCGCGGTGGACTCCCTGCTGGGGGAAGTCGCACGGGTGGTGGGCGGCAGGATGGCCGAGGTGCAGCTGGAGATGGAGTCGAGGGAGCGGGAGAACGAGAGCCTACGGCTGCGGCTGGAGATCTCGGAGGGCGAGCTGGAGACGCTGCGGGAGTGCCTGAGCAGCGCCCAGCGCTTCATCGACCAGCTGCCCTTCCCGGGCGGCGGGGGACAGGCCACCCACGTTTCCACCGGACCGCTGCCCAGCCCCGGCGTGGCGAGCCAGGATTGCGCCCCCTTCTTCTGCGAGCGCCATGCGGCCGACCCGCCGGCGGGCTGTCACGACACCGGCTGCCTCCCCGCCGCGCTGCCCGGCTGCTCCCCGGACCTGGCGGGCTCCCTTGGCGACCCGCTGCCGGACTTCGGCTCTGCAGAGGATCTGAAGGACTGCCACCTGTCCATCCAGGCCGACGGCACAGTCACCAACCACGACCTGCTGGACTCGCTCGCCGCCCCCGGCTCTCCGATGGGCTGGTCCGAGCAAGGCTGGTTCCGCTGGCGAAGAGGTGCCGGACTCGCCCGGCCGCGGCTCGGTGACGGGCGGACAGCGCGGCTGCCTCGGCTGACCGAGCGAAGCCCTCCGTGCGATTGTCGCCGCCTCCTCCCCGCCGAGCCTCTCCACAGCGGCCGGGGAGGCAGGGGAAGCGGCTCGGGGATAGCGGCGCTGGGCGAGGTGCTGCGCCTCCTGGGCGGGAGGCTGGCGGGGCTGCAGTGGGAGGTGGATCGGCGGCAGCGGGAGGTGGACCGGCtgaagctgcagctgcagctgtccGAGGGGGTGATGCAGGCCGCccggggggaggtggggggcgTGGTGGGCATTGCTGTGGTGGGAGGTGGCCGAGTTGCCCGGCACAGCCCCCCATCCTCtccaccaccccctccctcccctacAACCAGGTCCCTGCTTCGCTGTAGGGGGGGAGGCAGTTTGGGATCAGAGGGATCAGCGGGGTCCCCCAAAAGCCACCCTGCACGAGCCCCCGCCGTGCTGATCAGGAGATCTGGGGACGGAGTGCGGGGGAAGAGCAAGTGGGTCATCAAAGGGGTAGAATCAGATGACGTCAgtgcggaggaggaggagcagacgCAGAGAGGGGGCGCCGCGGGGGGCCAGGGCCGGAGCTCGCGGGGGGACGCAGTGCTGGGCGGGACGGGACTGGGGCCCGGGTTCGAGATCAAGCAGGAGCAGCCGACCGGGCGGGTGGCGGTGGCGGGCGGGGAGTGCGAGCTGACGGCGCGGAGCGTGGGGGAGCTGGGCTACATCCatgtggtggaggaggaggaggcagcggGCCCTCGCACACGCAGCCGCCGTCCTGCCGCCACACGCAAGCTCGGGAACCAGCCCCCGACCGGAGCCCTGCACACGCACACGGCCCTGAATGGAGaagcagggggaggggggctgaTTGGTGGCCCcaaggaggaggtggaggaggtggaggaggtggCCACTGGAGGAGGCCGGGGTGGGTCAGGGGGGCGTGGGCAGGGGCTGCCTGGGAAGGCGGGGGCTTTGACATCAAGAGAGGGGCCAACGGTGACGGCAGCTGTGGGAGCGCAGGGGAGACGCACTGCGCCGACTGTGGCTGCCGGCAGAGCGCAAGGAGGAGGCGGCGGAGGAGGGACGCCGCCCCACCACGCGCCCACCTACTCGCACTTGCactctcagcagcagcagcagcagcaggccccCCCCGGGTATAGTCTGTGGGCaccagaggaagaggaggaggaagaggacatGAGGACCCGCCCCCCCAGCGGGCCTGTGCTAGTCTTTTGTCGGCCAGTCCAGTGGCTGAGTCAGACGCTgtgtgggaggaggaggagggaaagagagagggggagaggagaaggagaagCAACGGTGTTGGCAGCAGCCCAGGGACCGCGGCTGGCGCGCCTGTGCCATGGTGCCACAGGAGTGAGCCGTTCTGCCCACGACAGGAAGACAGTCTGTGAGAGCAGAGGGAATCCCGGTGGGCTGCAACCCCTGCACCCCACCCTGCCTCTTCATACCATCAGAGACAACAAGAAGATATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122260 lncRNA downstream 63594 9813401 ~ 9815466 (-) True AMCG00015460
TU122205 lncRNA downstream 173029 9705727 ~ 9706031 (-) True G98012
TU122199 lncRNA downstream 197378 9681165 ~ 9681682 (-) True G98006
TU122081 lncRNA downstream 494936 9383508 ~ 9384124 (-) True G97906
TU122038 lncRNA downstream 722613 9154856 ~ 9156447 (-) False AMCG00015415
TU122395 lncRNA upstream 33050 9929562 ~ 9930787 (-) True G98126
TU122394 lncRNA upstream 33829 9930341 ~ 10017869 (-) False G98126
TU122408 lncRNA upstream 40564 9937076 ~ 9938322 (-) True G98138
TU122412 lncRNA upstream 77529 9974041 ~ 9986628 (-) True AMCG00015468
TU122440 lncRNA upstream 122252 10018764 ~ 10021555 (-) False AMCG00015479
AMCG00015469 mRNA downstream 2546 9871748 ~ 9876514 (-) True AMCG00015469
AMCG00015460 mRNA downstream 64125 9808818 ~ 9814935 (-) False AMCG00015460
AMCG00015454 mRNA downstream 109390 9756195 ~ 9769670 (-) True AMCG00015454
AMCG00015453 mRNA downstream 139745 9718458 ~ 9739315 (-) True AMCG00015453
AMCG00015452 mRNA downstream 160980 9712438 ~ 9718080 (-) True AMCG00015452
AMCG00015470 mRNA upstream 3160 9899672 ~ 9909434 (-) True AMCG00015470
AMCG00015468 mRNA upstream 77444 9973956 ~ 9979625 (-) False AMCG00015468
AMCG00015477 mRNA upstream 100551 9997063 ~ 10003088 (-) True AMCG00015477
AMCG00015478 mRNA upstream 106624 10003136 ~ 10004260 (-) True AMCG00015478
AMCG00015479 mRNA upstream 124853 10021365 ~ 10026019 (-) True AMCG00015479
TU122362 other downstream 39550 9837502 ~ 9839510 (-) True G98094
TU122072 other downstream 523328 9353217 ~ 9355732 (-) True G97897
TU122046 other downstream 700393 9176218 ~ 9178667 (-) False AMCG00015419
TU122010 other downstream 838919 9038614 ~ 9040141 (-) True AMCG00015409
TU121992 other downstream 918916 8956415 ~ 8960144 (-) False AMCG00015400
TU122506 other upstream 293909 10190421 ~ 10192287 (-) False AMCG00015497
TU122509 other upstream 300106 10196618 ~ 10198654 (-) False AMCG00015493
TU122510 other upstream 300106 10196618 ~ 10198654 (-) False AMCG00015493
TU122511 other upstream 300106 10196618 ~ 10198654 (-) False AMCG00015493
TU122512 other upstream 300106 10196618 ~ 10198654 (-) False AMCG00015493

Expression Profile