AMCG00015729 (mmaa,LOC106610208,LOC107550599)


Basic Information

Item Value
gene id AMCG00015729
gene name mmaa,LOC106610208,LOC107550599
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18740060 ~ 18770335 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015729
ATGCCGCCTGGTGTTCTCAATGGTGGAGTTGCGGTTGACGTTGGACAGGAGCCCCAGGCAGAAGCGGTTCCTGTTGTTGGAGGGATCAGTGAAGCCGTCCACCAGCACACTGGTGGAGGAGGCGTGGAAGGCCTCTCCCACACGGTTGTTGAGCTCATAGGCTGGGGTGCAGAGTATCACCGCCAGGATGTCACTAGCACCCCCTGCTGGATTGAGATTCACTTGCATGGTCCTCTGCAGTGGCTGGATAAAGCCTGTTTCCAGTGAATGAGTGAAGAAGGCCACTCTGAGAAATGGGATTGGTCGGTATCTTCTCGCGCGTTTGTACGTTCACCTCCTTCAGCAGGGCCTGCTGTGTTTATGCCTCTTCCCGCTGCACCGATGCATCACGTTTCCAGCGTGTGTTTCCGGCAGGCCGGGCGGCGGTGGCTTCCGGGCAGCAGAGGAGAAGGTACTGTCTTGGGGCGGTTTTGAACCAGAACCTGGAGGAGCTGACGAACCGGGAGAGGAGGCTGCTTGAACGGCTGTATGAAGGCCTGATCCAGGGCCAGAGGGCCTCCCTGGCAGAGTGCATCACCCTGGTGGAGTCCCAACACCCCCGCAAGAAGGAGCTGGCACAAGTGCTCCTGCAGCAAGTCTTGGCTTACAGGAGACACCAGGAAGAGCTCAATGGAGGAAAACCCCTGGCTTTCAGAGTGGGGCTATCTGGTCCCCCTGGTGCTGGGAAGTCCTCCTTCATCGAGGTTGTTGGGAAGATGCTGACGGGAAGGGGCCACAAGGTGTCGGTCCTGGCAGTTGATCCCTCCTCCTGCACCACTGGCGgGTCTCTTATGGGTGACAAAACTCGCATGACAGAGCTGTCCAGGGATATGAGGGCTTTCATTCGGCCCTCCCCTACCTCCGGCACCCTGGGGGGAGTGACCAGGACCACCAATGAGGCGATAGTGCTGTGTGAGGGAGCGGGCTATGATATCGTTCTAGTGGAGACAGTAGGCGTTGGACAGTCCGAGTTTGCTGTGGCTGACATGGTGGATATGTTTGTGTTACTGATTCCGCCAGCAGGGGGCGATGAGCTGCAGGGAATCAAGAGGGGCATCATCGAGATGGCTGACTTGGTCGTTGTGACTAAAGCAGACGGAGACTTGCTTGTCCCTGCTAGGAGAATACAAGCCGAATACACAAGCGCTATGAAACTGCTCAGGAAAAAGTCCAAGATATGGAAACCGAAGGTGCTACGCGTGTCCTCACAGACGGGAGAGGGGGTCCCAGAGCTCTGGGCGAAGATGGCGGACTTCCAGGAGGCCATGCTGCAGAGCGGGGAGCTGGTGTCCCGCCGGCAGAGCCAGCAGCGGGTGTGGATGTGGAGTTTGATCCAGGAGAGTGTGCTGAGACATTTTCAGGAGCACCCAGCTGTGAGGGAAGAGATTTCCAGGCTGGAGCGCAAGGTAACCAGTGGGGCCATCTCTCCTGGACTGGCTGCAGATCTGCTCCTCAAGGCTTTCGCAGAGAAGCGCTGACACGCACTGGACTGGACTCGACGCACAACTTCAGCCTGgctgtTTTTGGACAATTATATCAGGGCAAATCCAACACGATGACTCACTGCCACAGGAAAGGTGGCTGCCAGCTTCTGAGAAATGAAATCCGTCTGCTCCTGCGGTGACACTCTCGCTTGGCAAGCTGCTCTGGAGGGGAGGCAGGGATATCCCCCGCAGCCCTTAGAAACTGCATGCCTGTGTGCAGATCAGCCCACAACACAAACAATTCAGGGCCCTCTCTCTCAATGTGACTTGGATTCACTTTCTCTTGAAATGCACTGTCCAAAGTTCCCAACACAGTCTTTCCACCTCCCACAATCCTCGGGAATTAACTCGGATGGGgttcttctcctctcctcctagAGGCAGACAATTGAATCTGTTTAATCCAAAGCTAAATTGCTTGAGCTGTCTCACTAACTGGATGCAACAGTTTAATTACAGGAGACCGAGATTGTATCTTGAGAGGATTGAAATAAGATTCTGCTGGCTGCAAATTTCaaacttaaacaaaattaacttaaGCACTCTGGAAGACATGCCAGAAAACATACGCTGACGCATTTAGTTggaattttaacattttaacataaaataaaaggcaaataaatTCTTATAATAGTATCATACCTTGCATTGAAATGTTACTGTTCATTCACAAGGATCCTAAAGCACTTTTAAAGGTAGAAGGGGACAGGTATAGTGTGTGGCATCAAGTCGTTTATGTAGGCCAAATGCAGCAGCCCTGAATTAGAACTTAACGGTGTCAATGGAGTTAGCGTCTCTATTCTTTACATATTACCATGGGGTCTCTCCCAGCCAAAGATATTACAAACCCCAGTTTAATGTCTAAAGCACTTATTATGCACGGTATCCCCATATCCTACACCATGTTGCTGTTTTAGAAATTGTATTAGCCTGTGGTCTGCCAGCATCGTTCCCATCAACTTCCTGATTTACCTTAGATGTGTCCCATTCTAGCACTGGGCTACCCAAAACTTGCTTAGTTTCTCATGACTGCTGCCAAATCAACAGTCCAGCTCTGAATGAGGGAAGCAATCTTCAAATCAAGCCAAATCGACTCCAGAAGGACTTTGAATTCAGACAGGCAGCACTTTTGAGTCATGATTATACAATGTCTAGCTCTGTGGAAAGATTAATACAACTTCAGCAAAACCGTTGATTTTGACTAGTCAAATCGTGAAGTATTTTTGAAAAGTAATTTCCTGACGCTGTTTATGTAGTGAACACACCCACCTGTATCTTGCCAAACCAACTCTCTAGCAGTTAGT

Function

symbol description
mmaa Predicted to enable GTP binding activity and GTPase activity. Human ortholog(s) of this gene implicated in methylmalonic acidemia cblA type. Orthologous to human MMAA (metabolism of cobalamin associated A).

NR:

description
PREDICTED: methylmalonic aciduria type A protein, mitochondrial isoform X2

GO: NA

KEGG:

id description
K07588 MMAA, argK; GTPase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015729 True 2830 mRNA 0.51 9 18740060 18770335

Neighbor

gene id symbol gene type direction distance location
AMCG00015724 NA coding downstream 122373 18601232 ~ 18617687 (-)
AMCG00015722 pou4f2,LOC107550641,LOC101063993,LOC107670704,LOC102237073,LOC107742546 coding downstream 300911 18437740 ~ 18439149 (-)
AMCG00015721 pou4f2,LOC102790387 coding downstream 302581 18437183 ~ 18437479 (-)
AMCG00015720 LOC107565324 coding downstream 618299 18102674 ~ 18121761 (-)
AMCG00015719 NA coding downstream 667342 18071300 ~ 18072718 (-)
AMCG00015730 smad1,LOC105020940,LOC106610220 coding upstream 5025 18775360 ~ 18783878 (-)
AMCG00015732 abce1 coding upstream 59732 18830067 ~ 18839249 (-)
AMCG00015733 NA coding upstream 89926 18860261 ~ 18862808 (-)
AMCG00015735 LOC106602344 coding upstream 106153 18876488 ~ 18919607 (-)
AMCG00015738 smarca5,LOC107703846 coding upstream 340481 19110816 ~ 19125482 (-)
G100102 NA non-coding downstream 3021 18736456 ~ 18737039 (-)
G100040 NA non-coding downstream 141864 18591452 ~ 18598196 (-)
G100039 NA non-coding downstream 179113 18560715 ~ 18560947 (-)
G100038 LOC100136012 non-coding downstream 223331 18516451 ~ 18516729 (-)
G100019 LOC103376870 non-coding downstream 341039 18345234 ~ 18399021 (-)
G100109 NA non-coding upstream 29235 18799570 ~ 18806676 (-)
G100185 NA non-coding upstream 362025 19132360 ~ 19132566 (-)
G100218 NA non-coding upstream 854725 19625060 ~ 19699829 (-)
G100222 NA non-coding upstream 901407 19671742 ~ 19701459 (-)
G100233 NA non-coding upstream 942592 19712927 ~ 19713216 (-)
AMCG00015723 lsm6,LOC106610200 other downstream 109395 18627605 ~ 18630665 (-)
G99939 NA other downstream 902118 17837580 ~ 17837942 (-)
AMCG00015694 NA other downstream 2128616 16592228 ~ 16611444 (-)
AMCG00015691 NA other downstream 2204592 16524114 ~ 16535468 (-)
AMCG00015681 NA other downstream 2266883 16467299 ~ 16473177 (-)
AMCG00015752 NA other upstream 1204621 19974956 ~ 19981557 (-)
AMCG00015761 herc3 other upstream 1457032 20227367 ~ 20279644 (-)
AMCG00015800 NA other upstream 3910359 22680694 ~ 22702249 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other upstream 4973455 23743790 ~ 23746703 (-)
G101067 NA other upstream 6222618 24992953 ~ 25000890 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location