AMCG00015762


Basic Information

Item Value
gene id AMCG00015762
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 20341743 ~ 20363462 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015762
AAAACAGCGTAGTCCCAGACCTGGAGCAATAGAGCGAGCAAGTACCCAGTGCGTGTCCGTGTCTAGTTCATTTTCTCCAGAACGTTTAACTCGGGGCAGAAGGGTagtatcatttttattatttagattaTTTGCAGGAGAAATTATAACATATGCAATATtgaacatttagatttagattttcccATCTTGTCAATTTACTAGACCAGGCAGACGGAGATGTATTGCTGGGGAGAGGGGACAGCTGGGCAGCTTGGTCTGCAACTGCAAGAAAACCACAGTCTGGTCCTAATTCCCGAAATAGTGGCACGTTTGCCCTCAAATATTTCACATGTAGCGTGTGGAGAACAACATACTTTATTCCTCACGGAAGAAGGTAACGTTTTATCTTGTGGACGTAATTCTAAGGGACAACTGGGTAGACAGAACAGGGACAAGAAAACGCCAGGGCAGATAGAGAGACTGAGGGCAGTGTGTGGCCTCGCCTGTGGGCAGGAGCACAGCCTGGCAGTGTGTGAGTCAGGGCAAGTGTACTCCTGGGGAGGGGGCAGTGAGGGCCAGCTTGGGactggtgcttttgaagaaaagATTAATTTCTTCCGAAGCATTCCAGTTGTGCAAGTTGCTTGTGGAAAGTTCCATTCATTGGCACTTTCAAAGGATGGTGCAGTTTATTCCTGGGGGAAGAACTCCTTTGGTCAATTGGGGCAGGGTAAAGGGGTTTCCTTTACCCAGGCCACCCCCTGTCAGGTCCTGTCTCTCTACGGAGCCCCAGTGTCGCAGGTGGCTGCAGGGGGAGAGCACAGCTTCGTACTCCTACTCTCGGGGGCTGTGTACGGATGGGGCGCCAACAACACTGGACAACTGGGATTAAACAGAACTGACAAGAGAGGCAGGTTTACTCCATATGCTGTGCCTGCTCTCGGACATCTTGGTGTCTCTTACATAAGCTGTGGAGAAGCCCACAGTGCTGCTCTCACTAAGGATGGGAGTGTGTACACTTTTGGAGATGGAAATCAGGGTCAACTGGGGCACAACTCTACAGCGAATGAAATCAAACCCAAGAGGCTGGAACAAATAGATGGTCCGGTTTCTCTGTTGGCTTGCGGAAGATATCACACCCTTGTCTATGTGGCCACATCTGGCCTGGTCCTGAGCTTTGGCAGGGGCAGTGAAGGCCAACTGGGTCAAGGCAGCACGGCTAACCAGCTGCTGCCCAGTCCAGTACTGCAGACCTGGGGCTCGGAACTCACTGACACTCCGCAGCAAGATACCTCAACTTCCCAAGACAGAACCATATTTGCAGGATGGAACACAAACTTCATTCACAGTGCTCCTTCAAGGcctTCTGCGTCTAAAGAACAAATCATCAAAATAGATGAAGACATTCTTCAAAAATGGCTTACAGTGGGCATTGGCAGTGAAGAATGGAAACGGGCTAAACGCAGTGACTCTCCTTCAGAAAACAGCTCAGACTCTTACATCGTGGATTTGAAAGCTGTGAGAAAGACTATGAAGCGGCTTGAGAACACTGATTGGATCAGTAACCAGATTTTTTCAAGCTTCAATGAGAAACTGATACCACAGCTCCTGTCTGCATCTAAAGTGCTGAAGTTACTGGATATTTTCCTGATCCTACCCGAGTGCCCAGTACTGCACACAGACCAGAGTGCCATTGACCTGGTCCTTCTAGTGGCAAGAGCCATTGCTAATCTGAATGACTCGTCACAAAAAACCCTCAGAAAGTGGTGGTCTTCTCTGACACCGTCATTCTTGAAGAAACCCATCCATATGTTTAAGCGTGCCGTGGGTTTTGCGCTGACTTCAGGGTTGTTTGAGACCATTAAACCTGACATGAGAGAAGTACTCcagattttaaaacttttgtacaAAGCAAGTAAAACAGCAACAACGACTGTTCCCTTGAGTGAGTTCTACATAGATGAAATTGCcagacatttacttttaaatgtcgATCTGATGAACTGGCGTAGCTGGGCACAACGTGAGataaaatattATAGCGAACTTGGTTTAATGCTTTGTTCCGTGGGGAATCCTGAGCCCCTCCCTCTCCCATCTAATCCAATCTTCCAACTGCGGCTGAGACGTACAGATTTGATTCAAGACACTTTCAGGCAGCTGAATCAGGCAGATAATGAAGACTTCAAGAAAGATCTTTCAGTGATTTTCACAGATGACTTGACACCAACAATGGTCAACAAAAGGGACTTCTTTCTTCACATCTTTGTCCAGCTCATGGCACCAGAGTCTGGTATGTTCTGGTACAACAATTCGGCAACATTAATTTGGTTTCCTTCTCAGCCTGGACTGGATAAGAAGAGGTACTTTCTGTTTGGGATTCTGTGTGGAATTGCGATGTACAATAACAACATAGTACACCTCCCGTTCCCTCTGGCGCTGTTTAAAAAGCTGgtgTCTTGGGGTGGCAGAAATGTTGAACTTGATCCTAACAAGAAGGGAAAACCTGTGAATGATGCTAACAAggcTCAAGTTGTTGAAGACTTCGTGGATTATGTGTTCAACCAATCTGTGAAGGAGCTTTTTGATGAGTTCAAGAGAGGGTTTTTCAAAGTTTGTGACATGGATGTAGTTGAGTTCTTTCAGCCGCAGGAACTGAGGGGGGTAATGGTAGGAACAGAAGACTATGACTGGGACAATCTGAAACTGAATACACTGTATGAAGGAAAATACCATGAAAAGCACCCAAATATCATCATGTTCTGGGATGTGTTTGATGAACTGACaccagacaaaaaaaaTGTTCCTGACTGGATGTGATCGAGTTCCAATCCAAGGGATGAAATGCGTTCAAATGAAAATTCAATTCTTGCCTCATTCCACTCAAGATCACTTTCCAGAATCTCTCACGTGCCATAACCTTCTGTGGCTCCCCATGTACTCCACTAAAGAGAGGCTGCGAGACAAGCTCATCGAAGCCATCTATCACAACAGAGGCTTCTGGAAAGAATGAGGATAATCTGCTGTTACCAAAGGAAAACTCCTCTGTCTTCTGGAGACAGCTCCACCACCACATGCTCTATATATGTAAAACCTTGCTTCTACTAACAATTAAAAACCATAAACCATGTATTTAGTCATGTCCTTATAACATCTGGTCTCACCTACTGCAATGCTTTGAATGTGGGCGTGCCATGATATAGAAttagactaaataaataaatgattatccCAGAAGTGTATGAAAGTAAAATACTAATAATCTGCTTAGATGGGCTTCTTGGGATGTGTGTTGTAATTGTAACTAACAATCAATAGAActtgttaaaatgcaaatttctgAGACAAA

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015762 True 3331 mRNA 0.45 20 20341743 20363462

Neighbor

gene id symbol gene type direction distance location
AMCG00015763 NA coding downstream 847 20313130 ~ 20340896 (-)
AMCG00015755 NA coding downstream 219329 20115293 ~ 20122414 (-)
AMCG00015751 NA coding downstream 331121 19996169 ~ 20010622 (-)
AMCG00015753 LOC108275807,LOC108441536 coding downstream 396443 19932285 ~ 19945300 (-)
AMCG00015750 NA coding downstream 413216 19927382 ~ 19928527 (-)
AMCG00015760 NA coding upstream 83638 20447100 ~ 20469761 (-)
AMCG00015764 NA coding upstream 120108 20483570 ~ 20484280 (-)
AMCG00015772 NA coding upstream 123242 20486704 ~ 20586968 (-)
AMCG00015769 emx1,LOC106611434,LOC108246069,LOC103150078 coding upstream 324409 20687871 ~ 20697635 (-)
AMCG00015771 NA coding upstream 351493 20714955 ~ 20717677 (-)
G100416 NA non-coding downstream 32640 20307051 ~ 20309103 (-)
G100391 LOC100846954 non-coding downstream 188109 20153186 ~ 20153634 (-)
G100385 NA non-coding downstream 241660 20095881 ~ 20100083 (-)
G100381 NA non-coding downstream 346113 19993240 ~ 19995630 (-)
G100297 NA non-coding downstream 415641 19925802 ~ 19926102 (-)
G100468 NA non-coding upstream 413158 20776620 ~ 20776836 (-)
G100535 NA non-coding upstream 940572 21304034 ~ 21310751 (-)
G100554 NA non-coding upstream 1055213 21418675 ~ 21502989 (-)
G100555 NA non-coding upstream 1083689 21447151 ~ 21509487 (-)
G100556 NA non-coding upstream 1087607 21451069 ~ 21457293 (-)
AMCG00015761 herc3 other downstream 62099 20227367 ~ 20279644 (-)
AMCG00015752 NA other downstream 360186 19974956 ~ 19981557 (-)
AMCG00015723 lsm6,LOC106610200 other downstream 1711078 18627605 ~ 18630665 (-)
G99939 NA other downstream 2503801 17837580 ~ 17837942 (-)
AMCG00015694 NA other downstream 3730299 16592228 ~ 16611444 (-)
AMCG00015800 NA other upstream 2317232 22680694 ~ 22702249 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other upstream 3380328 23743790 ~ 23746703 (-)
G101067 NA other upstream 4629491 24992953 ~ 25000890 (-)
AMCG00015892 spcs3,LOC106602378 other upstream 7623293 27986755 ~ 27997677 (-)
AMCG00015891 wdr17 other upstream 7678101 28041563 ~ 28069876 (-)

Expression


Co-expression Network