AMCG00015778 (slc4a11)


Basic Information

Item Value
gene id AMCG00015778
gene name slc4a11
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 20948137 ~ 20975380 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015778
CAGAGGCCCCACCTTCAGGGATGTCCAAAAATGGATATTTTTTCCAAGAGATGGAGCTGCGGGAGGGGATGCCAGAGGACGGCTGCGGGGTCAAAGAAGAGAGCCAGGACTCGCCCATCGCCTGTGAAGACAACATGCATCTGTATTCCAACCCCCAGCAGCAGACAAACCcagCAGACCCAGATGATTCAGGATGTGTGTTGCTGAACACGTCGAGAAAGTATGTGAAGCTGATGAATTTCGAGGAGGAGATCCGAGCCCACCGGGACCTGGATGGGTTCTTGGCACGGGCCAGTATCCTGCTGGATGAGACGGCTGCCTCCCTGGATGACGTGCTGAAGAAGATGCTGCGCCACGTGGGCCAGGAGAGCCACACAGCCGAGCCCAGCTGCAACTTCGAGGAGGTGATGAGCATACTGTTCACCGACGCTGCCGCACAGGAGGTTAATGTGCACCTGCTGTCGGAGACAATCCAGGGAGTGACTGCCACGGCCACAGGAGTCCAGTACCAGCAGTCATGGCTCTGTATCCTTTGCAATGTGAAGAGCCTTCAGAGGCGGCACGTCTGCATCTCCCGGCTGGAGAGGCCGCAGAACTGGGGGGAGAATTGCTGTGAAGTTCGCTACATCATTCTCATCCTGGCCCCTCACAAAATGAAAAGCACTAAGACAGCTATGGAGCTGGGGCGCACCTTCGCCACCATCTTCTCCGACATCACGTTCAGACAGCGGCTGCTGGAGACCAAGACACAGGAGGAGTTTAAGGAGGCCTTGGTGCAGCAGCGGCACCGGCTCACCATCAACAACCAGAAACCAGCCACTGTGGAGGAGGAGACCGACCCTCACAGCCACAAGCCCCTCGTGTGCCAGGATTTCTTGAGGGCGGGCAGGGGCATTTATGAAGACCTCTGTAGACGGCTGCCTCTCTACACCTCTGACTTCACAGATGGAATCGTTGGGAGCAATAAAACCATCCTGAAGTACATCACCACCGCCATCTTTCTCTACATCGCCATCCTGCTCCCGGCCATTGCCTTCGGTTCTCTCAACGACGAGAGCACACGAGGGGAGATCGATGTCCAGAAGACAATCATTGGACAAAGCATCGGAGGAGTCGTCTACTCCCTCTTCGCCGGCTCTCCGCTGGTCGTCCCCCTGACGACCGCCCCCCTCGCTATCTTCATCAGCGTGATCAGGGGAATCTGTGATGACTACAATCTGAACTTCCCTGCCTTTTATGCCTGCATTGGCCTGTGGAACAGCTTGTTCCTCATCCTGGGAGGCATCTTCAATGTCAGTCTGCTGATGAAGCTCTTCAAACGgTCAACAGAAGAAATCATAgcccttttcatttcaattgcatttttgGGGGATGCTTTAAAAGGCACAATCAAGATCTTTCATAAGTATTACCACACGCCACAGCTGTTGAACGGGAGCACGGCGGAGGTGCACAGACTGACGGCACCGAACGGGACGGGTAGTGCTGGGATGGAGTCTCTTGTACTGTGCACCAGGGAGAGGCCAGTGCTGTGTCTGCTGCTCATGCTGGGGACGCTGTGGCTGGGCTACACCCTGTACCAGTTCAAGAGAAGTCCCTTCCTGCATGCCAAAGTGAGAGAGGTGCTCTCAGACTGCGCTCTGCCCATCTCCGTGCTCGTGTTCTCCTTCATCGGCTCCTACCTGTTCCTTGATATTGAACTTCCAGTGTTTAATTTCTACAAGAGGGAAATATTCATCGTAGCTCCTTTCAATCTCCTCTCGCCCTTGTCTGTGCTGAGCGCCATGGGACTGGGCTTCCTCCTGGCTCTGCTTATCTTCATCGACCAGAACATCGTGGTGTCGCTCACGAACGCCCCTGAGAACAGgcttCTGAAGGGCACAGCATACCACTGGGACCTGATGCTGTCCGGCTTCATCAATATTCTGATGTCAGTGCTGGGGCTGCCATGGATGCACGCGGCCTTCCCTCACTCCACTCTGCACGTGCGCCAGCTGGCCTACGTGGAGCAGCGCGTGGAAGGGGGGCATCTGTATGAGACGATCGTCAGTGTGAAGGAGACCCGGCTGACCTCGCTCGCCGCCAACTTGCTGATCGGGGTAtcggtgctgctgctgcccgtCCCCCTGCAGTGGATCCCCAAGCCCGTGTTGTACGGCCTCTTCCTCTACATCGCTCTCACCTCCATCGACGGCAACCAACTCTGCGACCGCATGGCCCTCCTTCTGAAAGAGCAGACATCCTATCCCCCCACTCACTATATCCGGAAAGTGCCCCAGAGGAAAATTCACTACTTCACGGGTCTGCAGATGGTTCAATTGCTTGTGCTGTGCACATTTGGGATGTACCCTCTGCCCTACATGAAGATGATCTTCCCTCTCTTTATGATCCTGCTTCTTCCCATCAGGAACAACCTGCTTCCTAAAATCATCGAAGCCAAGTACCTGGATGTCATAGATGCGCAGCACATGTGAAGGGTTGGACTctgaaaaaacagaatgaaaaaatgagagaaaagagaagaaaagagatataagattaaaaaatatattaataagcaATGTTCAAAAAGCTGAAGCACTTGGACCATGGATCTGGTCAAGAGTATGTGACTGTAGGGGACCAGGGACATATGGGATGACTTTGGTTGGaccatattttctttttgttcctgttttcttattttctttctttctttttcttttgtttcactttattgttgttattaatctTTAAACAAATCTTGCCAAAGGTTAATTCTCTTAAAtagttgtattgttattattgttatgtttttgatttattactGCAAACTCTTCATGGACCAATCAGTTGCTTGGGGTGTCCCAACGGGTaatgtgagatttgtttttaagtaagaTAGTGTTGTTTGTGAAAGTAATCGCAGGCACTGAATGGCCACTTTGTTAAGGTACGTCAGTCGGGTGGTGCCGATATTCATTGTGATGAGTCTAAAGCTCTGCGTATAGATGAAGGTTTGAATCTGGACCCATTCTAGGGGCAGCTATTGCACTTTATCAGTGTACATATCTATCTCTTCTGTATCAGTCAACCATAGTTTATGATCCACACTTTCCATTTTGATCGCCATTGTTGACACTTGGCATCTTTGAAAACTcggttgatttaaaaaaaataaaaataaaaacttcccTTGTAAATATATGAGTTCTGGGcttaataaatgttatattgtgttACATTTCGGTAATTATAATGCTCAAGCAGCCGTCATTCACTCTGCACAATCAGCCTCCTTTTCCTTAGCCGTGACTGTTAATTAATTGGCGGGTCTGTGAGTGAGCCTGGGCAATCTTAATAAAGTGACCAATCAGTTTACATTGTGTTCTGTAGGTAGCAGAATAAGTGCATTGTCCCTGGCTTTAGAGCGAGATAGATGGCTGATTAAAAGTTCTTCACATGGCTCTGATAAAAGACAGTGCTGATCTGAAACCATCTTATTCCAGGGAGATGGACTCATACCAAGGGAAGTCAAATTGTCagcattgttttactttttatttttttgtatgcgAACTAAGCACTTACTAAACTTGGACTCTCATTtcactggagagagagatgaatagCTATATTGAAATCTGTCCTCCAGTCCcgcttttttctttaattcgAGCCATTTTTGAAAATGCTTGCTGTACACGCACATAAGACCATTGACTGAGAGAGACGCATGCAATtaattcatgtgtttatttttgttctcttcCATCGGAAAAACAAGGATTAGAACAGATTGATCTGGAACATGCTCTGTGTTGTATTACGCACACACAGAACTGGGGGACCCATTATCATATGATATGTCAGCTAATCTTTTGACGGTTTTGCTTGCATGCCTCGCAGGAGAATTGGAACAGTGTTTGGCGTTAACTATAAATAGGCTTGGTAGATTTTGACGTTCATTTCTGTTGTCCCTACTTGCCTTTAAAGCTCAAATTAGCATTGTCAACCCATTTCCGTTTTTCAGTTGAGTCACACTGATGactaattatgcatttattaatagcTCCTGTCCATTGTAAATTGCAACCAGGTGACACAGCAGAATGCACCTTTTGGAAGTATGACCTTTTTGTGTCGTTGTGTCTAAGAGAAGGGCTGTAGGAGAGGAAATCTTGTGAgtagttaatgtatttattgcaacAACCCACCCAGCTAGATCTGTGCTTAATGTGTCTTTCTTCCCACAGAACGAACACACTGACAAGTTAATTAGCTTACTCAAACATGTGCATTGCTCTCTATCTCTGCATGGCAGTTTTAATAGCATCATCTTAATGGaaagtaattattaataaatgcatgattCATCGTTAGATCTCTGGGTGAGAAACGTGAATTAACAATGCTAATTCCAGCTTCAAAGGCAGGGAGAGACAGCAGAAGTAAATGCTGCAATGTACCAGGCCCAATTTAAAAGATTCAGGGATGCTGTATCAGATTTTTGCACATTGAATACATAATGTCTAGTTGTCATGTAGTTTGGATTGGATTGTTGTGATgattttagacattttattcCTGAGTCTCAGGCCTCACCCCCAATTACACATAGTGCAGCTCTCCAATCAGATCCGTTTCACCTCAGCTTTCCTCAAACAGGAGAAAACTAgggattattttttgttttcagtttaattcagttttcataTTAAGAAACTCGTATGTCTTGTCACATTGCACATCACACAACATCGACACTTTTGACCTATTCGAGGAGGAAATTAGGCACTTTCTTCTGATGTGAAGAGAGAGATTGTTTTgagaaatgaaatattttttgtgttgctttcatTTCACTTAATGATTGATTTCCGTAGAATAAAAATGTAGTTTCgggaacaaaacacatttgaatcaGTTTGTCTTTTCggctataaaaaaatactttcaatttcatatttaaatagtgtttgtattattatattactattattgttaataatattttagtAGACTGAAGTATGGGATTTGCTTCAGTAGTTTCTTGGCTCAGAAGGAACATAAACATAGAGCTGTCCAACAGCCTGATGCAGGGAGAATGCTATTTTATGACTCTccttattgttttcttaattgttaTCCTAATCTTGTTATTGCCGATGACATCATCAAAGTTGTCTAGTCATGGCATTGTGcaggtttatttttctattgaaaAGACAATAGATGTGAAGCTACCAGTTCTCTTACAGAAGGGAAGAAAATGTTTCCTAATTAAAAGTAATAGAATccatgtagttttatttttgtagtataGTTTTCAGAGAATTGCAAATTAAACTTGGCTGAGctatataaaactaaaaaaagcaaaacaatttatgtcaaaaatatatttttgtagaaGTTTCTGCAGTTTTTTGAATACAGACTTCAGTGCGTTCTGCCTAATTTAGATTAGATTGGATCACTTAAGAGAAGAATCCAAATAATATAAGAATATCATGTAACATATTGTGCTTTCTGAACGGATTGAAGTTAGGTACAAACGTAAAGAACACATACAGTCATACCGAATCAAATGTTCACACATTGGCTCGTTTTCCCAAATGATGCCGATATTACTACTGTTTAGGAACTGTGGATatgtttgcaaaatatttgaagGTTTTACTTGGCATAGACTGCAGACACCATGTTGtgtttcttaataaaaaaaaaatgtcagcaaaagatgaatctgaaaaaacagaaagaagacCATCTGCTGTACTGTTCTatgtaatgtgttatttttagaaTTGTGCATTCCActttaaatacagtgaaatgCTTGAGTCATTGCTTTGTCTTTACAAGACTCTCCacactttaaaatgatatacaaTTAGAATGTAACAAATCCCAGCCTACATACTTgtaatgtgtctgtttgtttacatttccccAAGTGCTAATTATATCACTATAGTAAAGCTTTTTCCTTTGAGCTGATAGGAAGGGAAACAACTGCACTGCATCtagctgttaaaatacataGCTGGTTGAAGAGCGCTTGCGGGAATCTCGTCAAGGGAACGGCTATGAGACATTATAtagaaatgtgtgtgagtgcagaAGGTATACAAGTGCAAAATGTTGGTGGAATAGTCTCCTCTAAACCCTTATCACCCTTTTAAATATGTACccagagggggggaaaaaagttttgtgCTTCAGAAGTTTGGGAGGTCCAAAACCTAGCTGTGATTTCTACTGAATGGTTGACCCTGGGtccataaatataaatattcctttataGTTATGCCAGATAATACCATATGGATTAAACTCAATTGCTTTTGTCAACCCCCTGTGTATCGAGGATCCTCTAATTCCCCCTGCATGTTTGTAGTCTGTCTTCAGTTTGTTCAAAAAGCAGGACAAACGGAGCAAAGGATACCACAGTCGTTAGCTCTTTTAATTAGAAGACAGATTACTGGCAGATCGTGTATCTCCCAAGTGATTTCAGTGATTGCATTTCAACATACCACAGTTAAACAAGATCAAGTCTTTACCTGCATAGAGTCTTTGGACTCTGAAGAGGAAATGGTCGCACGCATGATTGATAGATAATCCTCAGAATGGTTTAACTGAAGCTCACACTATCATCTCCATAGGGAGACCATGGTAGATCACAAGTGTTTAATTATCATGTGAAACTAGTATCAGTTGGTTCAATTAATAACAGTAAATTTGAAGCTTCTCGCAGAGCCGTGGTTACTCTCGGTTGGCAGCGAGCTGTTGAGGTACTCCAGG

Function

symbol description
slc4a11 Predicted to enable transmembrane transporter activity. Predicted to be involved in ion homeostasis and transmembrane transport. Predicted to act upstream of or within anion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Is expressed in several structures, including eye; gill; heart; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Fuchs' endothelial dystrophy; congenital hereditary endothelial dystrophy of cornea; and corneal dystrophy-perceptive deafness syndrome. Orthologous to human SLC4A11 (solute carrier family 4 member 11).

NR:

description
PREDICTED: sodium bicarbonate transporter-like protein 11 isoform X2

GO: NA

KEGG:

id description
K13862 SLC4A11, BTR1; solute carrier family 4 (sodium borate transporter), member 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015778 True 6786 mRNA 0.43 19 20948137 20975380

Neighbor

gene id symbol gene type direction distance location
AMCG00015777 NA coding downstream 9027 20803266 ~ 20939110 (-)
AMCG00015776 NA coding downstream 148911 20796939 ~ 20799226 (-)
AMCG00015770 NA coding downstream 219042 20727986 ~ 20729095 (-)
AMCG00015771 NA coding downstream 230460 20714955 ~ 20717677 (-)
AMCG00015769 emx1,LOC106611434,LOC108246069,LOC103150078 coding downstream 250502 20687871 ~ 20697635 (-)
AMCG00015780 NA coding upstream 86614 21061994 ~ 21093862 (-)
AMCG00015785 NA coding upstream 350701 21326081 ~ 21354291 (-)
AMCG00015783 NA coding upstream 976734 21952114 ~ 21956154 (-)
AMCG00015784 LOC104960468 coding upstream 989406 21964786 ~ 21975792 (-)
AMCG00015789 LOC105895513,LOC106523830,LOC103156770,LOC108249672,LOC103480607,LOC101076120,LOC103388995 coding upstream 1473873 22449253 ~ 22471204 (-)
G100468 NA non-coding downstream 171301 20776620 ~ 20776836 (-)
G100416 NA non-coding downstream 639034 20307051 ~ 20309103 (-)
G100391 LOC100846954 non-coding downstream 794503 20153186 ~ 20153634 (-)
G100385 NA non-coding downstream 848054 20095881 ~ 20100083 (-)
G100381 NA non-coding downstream 952507 19993240 ~ 19995630 (-)
G100535 NA non-coding upstream 328654 21304034 ~ 21310751 (-)
G100554 NA non-coding upstream 443295 21418675 ~ 21502989 (-)
G100555 NA non-coding upstream 471771 21447151 ~ 21509487 (-)
G100556 NA non-coding upstream 475689 21451069 ~ 21457293 (-)
G100566 NA non-coding upstream 813316 21788696 ~ 21788902 (-)
AMCG00015761 herc3 other downstream 668493 20227367 ~ 20279644 (-)
AMCG00015752 NA other downstream 966580 19974956 ~ 19981557 (-)
AMCG00015723 lsm6,LOC106610200 other downstream 2317472 18627605 ~ 18630665 (-)
G99939 NA other downstream 3110195 17837580 ~ 17837942 (-)
AMCG00015694 NA other downstream 4336693 16592228 ~ 16611444 (-)
AMCG00015800 NA other upstream 1705314 22680694 ~ 22702249 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other upstream 2768410 23743790 ~ 23746703 (-)
G101067 NA other upstream 4017573 24992953 ~ 25000890 (-)
AMCG00015892 spcs3,LOC106602378 other upstream 7011375 27986755 ~ 27997677 (-)
AMCG00015891 wdr17 other upstream 7066183 28041563 ~ 28069876 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_18409095_18422809 NA coding CI01000000 null 18407634 ~ 18422852 (-)