AMCG00015770


Basic Information

Item Value
gene id AMCG00015770
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 20727986 ~ 20729095 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015770
ATGATGCAGATTCCGACCCTGCCTCTTGGAAAGTATGGGTACCCGATGCGCCCTAATGCGCCGCTCTACCCAGACTACGCAAACCGCAACAGCTCTGTCTCCAAACCTGCCATCGGAAAATCCTTCACCATCGAGGCTCTTCTAAGCAAGCCCGACCACATTTCTCCAGGGAGTGAGCGAGCAAGCCCTCCTCACTGCGGGGGAAAGTACCAGCCCATCACCTCTCCCCTGGCGCTGCAGACACCGGTAGCCCATCACCTCTACACGCCGAGCATGATGCATTCACACCCCGGATACCCGCTGTATTTCTACCCGCCCTTCTCTTACCAGACCACCTGCCGCGGATCATTTTATTCTCAAGAAATCCCTCTCTCAAAGAGCAGCCTACACGCTTTTAAACACAAGGGTGGGAAGTCCAAACGGATGCGCACCATCTTCACCAACGAGCAGCTCTCCCGGCTGGAGAAGGAGTTTGCCCGCCAGCAGTACATGGTCGGCTCGGAGAGATTTGTCCTGGCGTCGGCCTTGCAGCTCACAGAAGCTCAGGTgaaggtttggtttcagaaccGCAGAATCAAATGGAGGAAGCAGAGCCTTGAGCAGCAGCAGGCCAAACTGGCCAAACTGGGTCTCGCCGCCCCCCAGAACAGCCCCGGCTCTCAGGGCGGCggggatgaggaggaggaggaggaggaggaggaggaggacttCTCTGAGGAGTCTGCAGAAGAGCTCGAAGTCTCCCTGGATCATAGTTAA

Function

GO:

id name namespace
GO:0032835 glomerulus development biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0003160 endocardium morphogenesis biological_process
GO:0048319 axial mesoderm morphogenesis biological_process
GO:0014028 notochord formation biological_process
GO:0021982 pineal gland development biological_process
GO:0030325 adrenal gland development biological_process
GO:0001947 heart looping biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015770 True 759 mRNA 0.57 3 20727986 20729095

Neighbor

gene id symbol gene type direction distance location
AMCG00015771 NA coding downstream 10309 20714955 ~ 20717677 (-)
AMCG00015769 emx1,LOC106611434,LOC108246069,LOC103150078 coding downstream 30351 20687871 ~ 20697635 (-)
AMCG00015772 NA coding downstream 141018 20486704 ~ 20586968 (-)
AMCG00015764 NA coding downstream 243706 20483570 ~ 20484280 (-)
AMCG00015760 NA coding downstream 258225 20447100 ~ 20469761 (-)
AMCG00015776 NA coding upstream 67844 20796939 ~ 20799226 (-)
AMCG00015777 NA coding upstream 74171 20803266 ~ 20939110 (-)
AMCG00015778 slc4a11 coding upstream 219042 20948137 ~ 20975380 (-)
AMCG00015780 NA coding upstream 332899 21061994 ~ 21093862 (-)
AMCG00015785 NA coding upstream 596986 21326081 ~ 21354291 (-)
G100416 NA non-coding downstream 418883 20307051 ~ 20309103 (-)
G100391 LOC100846954 non-coding downstream 574352 20153186 ~ 20153634 (-)
G100385 NA non-coding downstream 627903 20095881 ~ 20100083 (-)
G100381 NA non-coding downstream 732356 19993240 ~ 19995630 (-)
G100297 NA non-coding downstream 801884 19925802 ~ 19926102 (-)
G100468 NA non-coding upstream 47525 20776620 ~ 20776836 (-)
G100535 NA non-coding upstream 574939 21304034 ~ 21310751 (-)
G100554 NA non-coding upstream 689580 21418675 ~ 21502989 (-)
G100555 NA non-coding upstream 718056 21447151 ~ 21509487 (-)
G100556 NA non-coding upstream 721974 21451069 ~ 21457293 (-)
AMCG00015761 herc3 other downstream 448342 20227367 ~ 20279644 (-)
AMCG00015752 NA other downstream 746429 19974956 ~ 19981557 (-)
AMCG00015723 lsm6,LOC106610200 other downstream 2097321 18627605 ~ 18630665 (-)
G99939 NA other downstream 2890044 17837580 ~ 17837942 (-)
AMCG00015694 NA other downstream 4116542 16592228 ~ 16611444 (-)
AMCG00015800 NA other upstream 1951599 22680694 ~ 22702249 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other upstream 3014695 23743790 ~ 23746703 (-)
G101067 NA other upstream 4263858 24992953 ~ 25000890 (-)
AMCG00015892 spcs3,LOC106602378 other upstream 7257660 27986755 ~ 27997677 (-)
AMCG00015891 wdr17 other upstream 7312468 28041563 ~ 28069876 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_04851137_04855438 EMX1.2, EMX1 coding CI01180000 null 4851137 ~ 4855584 (+)