AMCG00016001


Basic Information

Item Value
gene id AMCG00016001
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 32836453 ~ 32840215 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016001
tgagtgtgtgtgtgagagagagagagagaggaagcacTGCGAGCtcaacacagacacacggaGCAGCATGGCGGGGCTGAGGGGCTTCCAGCGCGGCGCCCACTGGCCCAGGAAGAGCTGGACgaagctgctgctgctcggCGTCCTGTCGCTGCTGTGGCCCTGCGTCCGCCCGGGAGGAGCTCCGCTGCCAGcgctGTCCCCGGTGCCCGGCGTGGTGGAGGTCTGGCAGGCAGAAGACGGCGAGCTGCTCGTCCCCAGCCAGGTAAGAGACTCGCCTTTGGGCCGCGCCGGGGCCGCAGGACGGTGCATGCGGGCTGGTGGCTTCCTGCGGACGGGCAGTGCTGGCATTGTCATGGGAGGCGGGAAGAGGCAGCAGGGAAAGCCACCTGTTAGCAGCCGGCCATGTGCGGTGCGGTCAGGGCGGGATGCAGCTCGGATAGCGGTGCTCTACAGGTGGAGGAGCACCAGGCTGCACATCATTTGCATGTCCGGGGGGTTGAGGTCAGTTATCAGGTCTCAGGACAGTGACAGTCCCCTTAAGAGCCAAACTCTAGCATCCAGTGTGAGCGTCCAGGGCGCGACCTGAGGATTTCTTCAAGTTACTTGAGTGCAGATCCCTGTAAGTAACTTCTGGGAcccatattgttttaaaatatacagacagATACTGACTGGGCTTCAGTATAAAGCTGAACTGCAGTGCTCTTGAGACCTGCCTTCCCTGGACACTGCTTCTCAAGCATCCCGATGTGGGCCTgactggagcagcgctgtggaCGAGGCACCTGACACCCGTAGACTTTCTCTCCTGAAGACAGTTATTTTTCCTGTTATGACCTTTTTTTGAAGGATGCCTTGGATGTTATTTGTGGCATTGACAAGTCACGATGCTTCGTTCACAGCCACGGGCAAGGTCTGCTGTATCAAAGGGAAGTGCTGTTGCAGGGAGCCTGTCTGCGGCGAAAGGTCGTGTGTGGCTGTGGGGTGAAGGGAGGCCATTTCTCCGCACAAGGAGCAGCAACTCCATGAACTGCAGGACACTGTACTGAAGCACGCTGTCTTTGCTTTTGTGCCGATGTACAGCTGTAGGACGGCTCTGCTGTGGTCTGTAACTGCttgaaagtgattttaaaataatgttgaaacTTCCTGGCACATACTTTCAGTTTTAATAGGGTCAGAAGAGGACAGAGTTGTGGCAACAGGAGCAGGTTTAATGTAACCCGCATACATACCATTAACAAGGCTTTTGAGAGGCGTGAAGAGCCGTCCTGAACCCAGTGTGGCTTTGAAACGCTTTGCTAATGTCGTAATTGAGACTGAGAATTTCTCACCTAAGTTAAAATTACCAGCTTGCTATTCAGACATGCGTCacgtgtgtatatgtatacattccacacacacacacgcatgcatatGTCAAATATATCAAACACATGCATgccaaatatatacacacacactgacttaTTTCTCCTTTGTTGTCTTTTCTGAAGTCACCATTCAGTTATTTAACCATTTACTGACTCCTGGAAGGCTGAACAGTttggtttaattgtgtttgtctCATGAGGCAGATCAGTAAGCTTGGTGCATCCACTGTACACTGACGGTCTGTGTGTCGCAGTCGGGGTGTTTTATATCGTGCCTGTAGCTGTTTGGGCTGCTTGAATTCGTCACATAGGACTGATTGATTTCAGTACGGAGAGGAGGTtatgttgaatgtttttgtgAGAGGTGTGAGACCTGCGCTGTCCTCCACTGCATCAGTCTCCGCTCCTGTGTGGAGGTCCGGCCGTCAGTGTGTCTGAGCAGCAGATATTGGACATTGTGGACATCGTGTCTGAGACGCACAGGGAGTTTCACACGCTGAAGCCCTGGTGTTGTGGTAGTGTTTACCTGCTGCAGGATCTTCAAAACTTCAAATCAAGGATGAAATCTGAGGAGATTGAGGATTTATTCTAATAGATTCTGGGAAAGACTTATGCAGGGACTATTAAGTGATATCTTTTAAAGATATTGAATAATATTTAGCtatacctttaaaaaacaaatgatcttCGTAGAAAAGCCGCCTCTCTGGTATATTGGATTGACTCCGGTAGACTTGATTAGATCGAGTCAAGATTAACTCTACCTTTCAAGTGTCGCGTTTCACACAAGAAGTGCTTTGCAGATGATCTTGTGTGCTTCGTGTCAGACTTCTTTGGCAGAGACGTGCGGCAGTAATTGACATCCCTGCGTTAGTGTTCGAGCGCTGCACCGGTATTGGTGGTTCAAACCCAAAGGTCGTGTTGTTTTTCACCTCTGAAGCGTGTCTGTTGATTGTTGCTGGGAGGAATCTTGTTTGGCCAGGCCGTCAGTGGGATACGGACTTGAGGAGTGCTTCTGATTTGTCGAGCGTGTTGCCATACGGACAGGCCGACACCCTCGGCTGCCtggtttacacacaaacacacacgcctCCCCCCCAGGTGCTTGTGGTGATGCAGTACAGCCCTGTTCACACCTTCGCCTTGCAGCTGCACCACTGCCAGCGCCGGCCAGGGCAGCGGACCAGCGTGGCCCCACGCACCCGGGGAAGTGACAGGCCGGACAGCGGGTGACACGAGCCTGTGCGTGGAAAGCACTCGCTCAGGACGAGAGACTCCCCTCGTGAGAAGCGTCTCCTTCAGCTTTGTTGCATTTGACCAATTTATGAATGAGTGAATTCCTGTCCTGTTGAATAATTGTCATTTAATGGTTGAACGGCATTCCAACAGAACCTGTGCCATCTGTCTGTTCCCCTGCTCTCCTTTTATCTCCATTATgacttaaatacattaaaaactaagTATCGTTATCCTTTCTTGCCAGTTACACAAGGGTGCTGATGATTTGTGTATAGAAAGtaaaatggagagagaggaaacgCGTGTGATAGGATACAAGCTTTGCTGTTTCTAAACGAGGTATTAAACACTACAAGACCGCAACCGACAGGAGTGTAGTGTTAATGGCATCTCCAGGATttggtgttttatatatatttgtctttaaaaatgtgtaatttcctAATCTGTGCAAACCATCGCACTTCTTCTTTATTTGCCATTGTCATACAAAGTGTAATTGAGTTGGaaattgtgtgtgaaaacaacaCATCTTTGAAATGTAACCGATCTTCTCCCCACGTTTCTCTCCAGGCTGATGGAGAGCCGAGCCAGGATGGCCTCCCCCCGCAGGAAAGGTAAGGCCGCGTGTTCCCGTGTCTCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016001 True 3259 mRNA 0.50 2 32836453 32840215

Neighbor

gene id symbol gene type direction distance location
AMCG00016002 NA coding downstream 13072 32805680 ~ 32823381 (-)
AMCG00016005 NA coding downstream 63840 32761836 ~ 32772613 (-)
AMCG00015999 NA coding downstream 112911 32719226 ~ 32723542 (-)
AMCG00015998 NA coding downstream 122131 32709248 ~ 32714322 (-)
AMCG00016000 NA coding downstream 130515 32704837 ~ 32705938 (-)
AMCG00016003 NA coding upstream 6959 32847174 ~ 32853532 (-)
AMCG00016004 trim2 coding upstream 17102 32857317 ~ 32876949 (-)
G102261 NA non-coding downstream 40120 32796105 ~ 32796333 (-)
G102237 NA non-coding downstream 138077 32698027 ~ 32698376 (-)
G102234 NA non-coding downstream 155122 32664772 ~ 32681331 (-)
G102149 NA non-coding downstream 305859 32530271 ~ 32530594 (-)
G102092 NA non-coding downstream 473590 32362463 ~ 32362863 (-)
G102281 NA non-coding upstream 56600 32896815 ~ 32897014 (-)
G102302 NA non-coding upstream 103964 32944179 ~ 32944499 (-)
AMCG00015985 gucy1a3 other downstream 379575 32449500 ~ 32456878 (-)
AMCG00015984 gucy1b3,gucy1a3,LOC107572203 other downstream 389488 32423128 ~ 32446965 (-)
AMCG00015979 NA other downstream 446441 32386913 ~ 32390012 (-)
AMCG00015965 NA other downstream 866166 31954646 ~ 31970287 (-)
G102017 rapgef2,LOC102783712 other downstream 891278 31908489 ~ 31945175 (-)
AMCG00016006 NA other upstream 68961 32909176 ~ 32938058 (-)

Expression


Co-expression Network