AMCG00016002


Basic Information

Item Value
gene id AMCG00016002
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 32805680 ~ 32823381 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016002
ATGTCGTACTGCTGGTTGCTGCAGTTGTGCATCTCTTCGTTTTACGTGCCCGGTGTCCGGGCCCTGCACTTCCAGCCCTCCACCCTGCAGTTTGGAGCACAGCCACTGGGGCTGCCAAGAGCTGAAACAGTATACGTGCACAACCCCAGCCAGGAACTACCAGTGACATTGATATCAATGTTTACATCTAGCAGACATTTTCACATGCCTGCGCTGCAGAGGAGGGTGATCCCTCCCCGGGGGAGGCTGTCCTTCAGGGTGATCTTCCTTCCGACGGAGGAGGGCAGTGTTGAGAACTCCTTGTTCATAAACACCTCGTCGCACGGCGTGCTGTCCTACCAGGAAGATGCAGCCAATGTGAGCATAATGGGATTGCAGCTGGAATGCAGCCTTCCTAACCAGAGCACCAGGCATCCGCAGGGGCTCTGCTTTCGGACGGAGCAGAAGCTGTCTGTGCAGATCAGCCTGTTGGAGAGAGGAGAGCACAGACACGCAGACCTGGAGAAGATGAAGCAGTACGTGCAGGAGCACACCATGGTCCTGTTCCTGATCTCCACGGGCCACGGGTgggAGCCACAGATTAATATTTATGTGTTGAATTCTGGATTTCGACATTTACATGTGAAGGAGATGCAGCTGCTCTCAAGAGGGGGACGCTCCCTGCGGTTTCAGCCGATGTCTCTGGGGGCGTCTGCGGCAAACTTCACCAGAGTGGCTTCGCTCATTTGTGGAGGCGCTTCACTGATTCAGGAGAGGAAATACGCAGGACACGTCTTCCAGGTCCTGGGCAGCTACACCCTGAAGACCTACCCAGCCTTCCACATCGCAGACCGGAGGCCTGGCTACGACCCTCCCACCTTGTTCCACATCAGACAGAAGCAGAGCGGGGGGGGACTCGCAGACCTGTGGCTCACCAACAGCTTCAACTTCAGCTTCTCTGTCAGCGCCGTGTCCCTGTCCCCGGAGCTGGGCGGGCTATTGAAGGTGCTGAACTTCAGTGGGCCACTGCTCGTGCCCCCCGGCTGCTGGAAGGTGCTGTCCCTGCAGCTCAGCGGCTCCAGGTCCCCCCTGAGCGTCCTCACCAGGCTGGCTCTGCTCACCAGCGTGGGGGTCTCGCTGCAGCTGCCCCTGCACATCCGCTCCACGGTGTCCCAGGGGGATGTGCTGTTCGAGGCCAGCGGAGGCTGTGGCAGCCCCTGCCAGCTCGCGGTGTCTGAAGCAGgtgCCGCGAAGTGGCACCAGACTCTGCTCCTGGACTCGTCCACCTGGCGTGGGGACAGCCGCCTGGCCGCAGAGCTGAGCTCCCGGTGGCGCCGAACAGCGTCGCTGAGCTGCAGCTGGCCTCGCCTGCCCATGGAGACCGGGCTGCCTCTGGACTTTGGTGCCACGCCGCTGAACGAGAGCAAGGTCAAGTTCTTCCCCCTGAGGAACCCGTCCTCCTCCCCCATCACGGTGCAGCTGCTCACGCTGTCCTCCTACCCTGCCGCGCTGGAGGCGCTGGACCTGCTCACCAAGTGGTTCAAGATCAACCCCCTGTCTGTCAACGTGACGACCGTGGAGTTCACATTGGTGCCGGGGGGACGGCAGGACCCCAGGACCCTGAAGGCGTCGAGGGGCTCGAGGGTCTTGCAGCTGCGGCTCCAGCCCTGGGAGGTCCGGGAGGTGGGCGTGGTCTTCACCCCCTCGGAGCACAAGCCCCTCACCTCCATCATACTGATCAGGAATAACCTCACGGTGCTGGACATGGTGCTGGTGACGGGGCAGGGGGCGAGGGAGTTGCTGCGCGTCGGGGGGAAGCTGCCTGGACCCTCGGCCTCGCTGCGCTTCAACGTCCCGCAGTCAACCCTGATGGAGTGCAGAGATGGGCTCAAGACCAGCAAACCCCTGTTCGCCATCCGCAAGAGCTTCAAGGTGGAGAACGCCGGGGAGCTGCCCCTGACAGTGGTGTCCATGAACATCAACGGCTACAAGTGCCAGGGCTTCGGGTTCGAGGTCCTGGACTGCCGCTCCTTCCAGCTGGACTACAACTCCTCCTCTGAGATCAACATCGCGTTCACGCCGGACTTCACATCCTCCTGGGTGATCCGGGAATTGGCGCTAGTCACGGCACGCGGCTCGTCCTTCCCCTTCACCCTGAACGTCACGCTGCCGCACCACATGCTGCCGCTGTGTGCCCAGGCGCTGCCCGGGCCCAGCTGGGAGGACAGCTTCTGGGTCATCACCATTGTGTTCACCTGCATCTCTCTGGGCGGCGTGTGTCTGATGGCCATCCGCCAAGCCCAGTACATCCTGTCTGAGTTCGTGAGCCCAGGAGCGCGGCAGAACCACCCCTCTGTCCTGACTCGGGACAACAGCCCCGTGGACACCATTAGCCCCGGCTCGATGAGTAAGGTGAAGGGCAGCTGCAAGACATTCGTGGATTCCTTCAACATGTCGGACAAGAGCAAAGGCAAGGGCTCCCTGCCCCTGGCCCCTGGCCCGGCCCGCACTCAGGCCCCGGCCAAGAAGATCCCCGCGCCCCCCCTGGCACCCCAGCGCAAGCACAAGGTCTCAGTCTACTATGGCAAGTACCGTGTGAACCCCGCCGCGGCCACGGCAGCCCCCCTGGAGGAGGATTACGAGCCCCACAGTGACGGCCCGACCCCCGAGCCCGGGGCCAACCCCTGTGCACCGGAGCCCCCCGCGCCAGCAGAGAGGAGGCCGCCCCCCGCGGTGGACACAGAGCCGGCTCCCGCTATGTTTCCCATGGAAACACACTGCCTTCTCCCCGAGACCCAGGGGGGGGTGCAGGCCGGCAGGGCGGGGCTGCTGGTGTGCAGCGTGGCTCAAACCCCCTGTCCAGACAATGCCCCTCCATCGCCCTGTGGCCCCCGGAGCAGCCCCTGCCCTCAGCACAGCCCCCAGCAAGGCCCCCAGCAAGGCCCCCAGCACGGCTGCAGGACTGACGGCCCTGGCACCGAGTTAAGGGACAACAGCCACGCGAGGAGGAAGCACAGCGACAAGAGCGAGGCCAGCGCTGCGGCCGGCGGGAAGAGCCGGAGGAACTGCGGGAAGAGCCGGAGGAAGAACACCGAGGGCGGGGCGGGGGTCCCTCAGCCCAGTGTGGCTCTGCTGTCAGAGAAGAGCAGGGAGCCCGAGTGGAGAGACCCCCGCAACCCCACACGCCCCCGAAACCGCTGTTCGGCAGCCAAGGCCGACGGCCCCCGAGCAGCCCCTTCCTCAGACATCCCCGGCAAACACATGGGCCCCGAGCGGCGGCCACTGTGGGAGTCGGGCTCGGACTCGGGCAGCTCCTCGGGCAGTGTGCCCGCCAGCAGAGGCAGCTGGGGCAGCTGGAGcagcgccagcagcctggaGGGGGAGCGGGAGCAGCAGGGCACATATACGTACACCACCACACCCCCCAAGAGAAGGGAGGCCCAGCACAGCGCCTGTCCTTCTGAGAGGGACTGCTGCCAGACTGACTTCtcgagcctccggacccccagCCAGTACAGTCTGTACCGTAAGGAGCCGTGCCAAAGCCCCCTGCCGCCCGCCGCCCCCTGCTTCACTCCCAGCTTCGCCGACGTGGCCGCCGGGCTGGAGAGGAACACGGGTGTTTCGGGTCCGTACTCCGCAGAGGAAATGTGGTCGACGCCTTCGATTCCCTTAACCAACGACTTCAGATACAACGCCACCGAGAGCCAGCCCTGCGTCCCGCCGGGGTCGGCGCTGTGCTTCTACAATGGGAACTACTGCTCCCTGCTGGAAGGCAACACCTTCTCCTGCCCCGAGACGCCCGGCTCTCCTTATGCCCCCCCGCCGGGCTGGAGCGAGGCCGGCCCTCAGGACGTCACCTCGGCCTGGGACAGCACGGGACACAAGCCCTTCTTCTCCGGCACCCGCAGCCTGTCACCCATGTCCGGCCTGTTCGGCTCCATCTGGACCCCCCAGAGCGAGCCGCCCCAGAGCCCCTTTCATGCGGTGCGGCCGCCCCCCCCGCAGCCCTTGCCCGGCGCCGGCCGCCCCAAGCAGTACTCGAGCTTCAACCCCTTCGGCCCCCACATGCACCTGGACATCTGGAACTCGTGCTCCAGCCGCAGCTCCACCTCGCAGCTGTCCAACGACTCGGGCTTCGGCGGAGACCTCTGAGCACGGCGGGCTTTTACTCACAATGATAGGAAGCaaagaaagaggagagaagaatgtgaaaatactttgtttttttcctccaaattCAATGTGTAAAGTtaagctttttttgttgtatatttttctaGATTTGGACATAGAAAAttctgaggaggaggaggacgataATAAAACGTTTTTGTACTGAAa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016002 True 4323 mRNA 0.63 31 32805680 32823381

Neighbor

gene id symbol gene type direction distance location
AMCG00016005 NA coding downstream 33067 32761836 ~ 32772613 (-)
AMCG00015999 NA coding downstream 82138 32719226 ~ 32723542 (-)
AMCG00015998 NA coding downstream 91358 32709248 ~ 32714322 (-)
AMCG00016000 NA coding downstream 99742 32704837 ~ 32705938 (-)
AMCG00015997 plrg1,LOC107757621,LOC107695461 coding downstream 115791 32682415 ~ 32689889 (-)
AMCG00016001 NA coding upstream 13072 32836453 ~ 32840215 (-)
AMCG00016003 NA coding upstream 23793 32847174 ~ 32853532 (-)
AMCG00016004 trim2 coding upstream 33936 32857317 ~ 32876949 (-)
G102261 NA non-coding downstream 9347 32796105 ~ 32796333 (-)
G102237 NA non-coding downstream 107304 32698027 ~ 32698376 (-)
G102234 NA non-coding downstream 124349 32664772 ~ 32681331 (-)
G102149 NA non-coding downstream 275086 32530271 ~ 32530594 (-)
G102092 NA non-coding downstream 442817 32362463 ~ 32362863 (-)
G102281 NA non-coding upstream 73434 32896815 ~ 32897014 (-)
G102302 NA non-coding upstream 120798 32944179 ~ 32944499 (-)
AMCG00015985 gucy1a3 other downstream 348802 32449500 ~ 32456878 (-)
AMCG00015984 gucy1b3,gucy1a3,LOC107572203 other downstream 358715 32423128 ~ 32446965 (-)
AMCG00015979 NA other downstream 415668 32386913 ~ 32390012 (-)
AMCG00015965 NA other downstream 835393 31954646 ~ 31970287 (-)
G102017 rapgef2,LOC102783712 other downstream 860505 31908489 ~ 31945175 (-)
AMCG00016006 NA other upstream 85795 32909176 ~ 32938058 (-)

Expression


Co-expression Network