AMCG00016064 (LOC105011210,LOC107718790)


Basic Information

Item Value
gene id AMCG00016064
gene name LOC105011210,LOC107718790
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4476339 ~ 4490665 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016064
GGGTCAAACACAgaattagtatggtgttcctaataatcctttaggtgagtgtatttcatGATGGATGTGACGTTGCACTTCTTGTGAGATAACCCATTTTAAATCATCACTGTTCTAGCAGGAGAGGGACAAAGGTCAGAAAATTCAGAATGTAATTTCTGGATTAGGGATTTAAGGAATCTGTAatctgtgtaaaaatatatgACACTCTCAATAGTAAGAAGTAGATTTGGAAATAATTCCTGAATTGTACAGAGAATCAGGGCACCCCATTAAGAATCAGTTCCAAAAAGGCAGACATGTCTCATTCTAAGTGAAAAAGCTCTCTCCAAGACTTTCTATCCATATGGACGAAGTTAACTGTGACTATAGTAATGCTTATATAAGGGACAGCCCTAGGTCATTTATCTCAACAAGATATCAGCATGTCTGTAATGAAGGTATTAATGAAAGCATatctttgtctttgttattgGACATGTGCTTTCTATTGAGAGGAATGAAACTGTAGAGAAGCTGTGCTTgtttatagatgtgtgtgtgtgtgtatatatatatatatatacttttttctacTACCCCATGTCTTTCCATGTgaagtcaatcaatcaatcaaccaatcaatcgATCTGTTTTATGTAGTACAGCACCCACTGCAAAGTTGCCAGCGGAGCGCTTCACAGATTAAAAGAACGATGTTCTGTAAATGCAAAAGTAAAGCACAAGGCATGGAGgagataaatattaaaactcCTATAGGATGACAGGCTGTACCATAAGCAGTTCAATTATCAGAGTCTAagatgaggaagagggggggggaagCCAAAGGAAGTGTCAGGGATGCAGTCAATGCTGTGCCAAAGATTATAGATGGCAGTGtgagaaggaaggagggatTTAACTGTGGTGTGTCTGTTTATGCAGGATATTCGGTGTGGTGCTCATTATGGTGGACATCATCCTGGTCATCGCTGATCTGGCAACGCCAGACAAAAGCAAGGAAGCAAGGGATGCCCTAGAAGGCATATCTTTAGCAATCTCACTGTTCTTTATGATTGACGTACTCCTCCGGGTCTATGTGGAAGGGTAAGGCAGACCAACATGAAACTCCATTGCACCGTCATGCTGCTGGCACAAAACCTAAACAGGAATGAGAGCAGATTTGGTTATTGTGGCTTAAAGGTTGTcttcttttcatcttttattaGGTAAGTGTTGTGCAAAAAAAACTCTGGTCCTGCAGAGTCCCAGTTCTACTTAGTTTCATAgatcaccctaaatcaccaattttcaatgatccgaagcataccacctcatctgtgaaacatggtagaggtagtgttatggcatgggcatgtatggctggcAAGGGAACTGGTtaccttgtatttattgatgatgcgattgctgacaaaagcagcaggatgaattctgaagagctatattatctgctcagattcagccaaatgcttcaaaactcattggatggcgcttcacagtATAGATGGACAATGActcgaagcatactgcgaaagcaacccaagacttttttaaggtgaagaagtggaatgttctgcaatggccaagtcaatcacctgacctgaatccaattgagcagcatttcacttgctgaaggcaaaacaccccaagaacaagcaggaactaaagacagctgcagtataggcctggcagagcatcaccagggaagaaacccagcatctggtgatatctatgggttccagacttcaggcagtcattgactgcaaacaatttgcaaccaagtattgaaactcacaatttaattcatgattatgttagtttgtccaaatactttttagcccctaaaattggaggaccacatgtaaaaatgggtgtaattcctacacagCTACATCCATATTGGATgataactaccctcaaattaaagatgaaagtctacacttcaagcacatcttgattgtttcaaatccattgtggtggcatacagagccaaaatgatgacaattgtgtcactgtccaaatatttttggacctaactgtataaatgAATATTGTTAGTAGAAACAATGTTGTTCCAAATATTAAATCTGAGCACAGGCTACATGATGAAAAATGTAGATATTAAATAGTAATCCAGCAGCAAGACTAAATCAGTTGGACTGCATCTGACCATTAGCCCCTGTGTCCGACTAGCTGCTACAGCAACCGAAGCTTCATGGGAATTGCAGATGTTGACTGTCTTATCCCTGTGTGTGAAACTCCCTTTGTTCAGTGGAAACCTGAAGGTTTTGTCTTGTTTCAGCTTCCATACATACTTCAGCTCCAAGCTGAACATTGTGGATGCCTGCATCGTTGTCATCACCCTTATTGTCACCATGGTCTACACTTTCTCTGACTTGACGGGTGCCAAACTGATCCCCAGAATGGTGTCGTTCCTGAGGGCTCTAAGGATCGTCATCCTGGTCAGGATCTTTAGGCTGGCCTCTCAGAGGAAGGACCTGGAGAAGGCCACCAGGAGAATGGTCTCTGAAAACAAAAGACGCTATCAGAAGGATGGCTTTGACCTCGACCTGACTTATGTAACCGATCGCATCATTGCAATGTCCTTCCCATCATCAGGGAAACAGTCTTTCTACAGGAATCCTATTAGGGAAGTTGCAAGATTCCTCGACATGAAGCACAAGCATCACTACAAAGTCTATAACCTATGCAgtGAGAAGGGCTATGATCCACAGAACTTCCATTACAGAGTGGAACGTGTCTTCATTGATGACCACAATGTGCCTGTGCTTGAGGACATGCTGAAATACACGGCCAGTGTGCGGGAATGGATGGCGGCAGACCCTCTCAACATCATCGCTATCCACTGCAAGGGTGGGAAAGGTCGCACTGGGACGATGGTGTGTACATGGCTGATAGACAGTGACCAGTTTGAGAGTGCAAAGGAAAGTTTAGATTACTTCGGAGATAGGAGGACTGACTCTAGCATGAGTTCAAAGTTCCAGGGAGTAGAGACTCCATCACAGAGCAGATATGTCGGATATTATGAGATCATCAAGAACAAGTACAGCAGACAGCTACCCCCTGAGAAGAGCCTCAAAATAAGAAGCATCAGAATCCACTCTATATTGGGTGTGGGAAAAGGCAATGGCAGCGACTTGAAGGTGAAAATAATTGTGAAGAAGGAGACAGtctttcagtgtgtttgtgccaCACAAGAGAATTGCAAGatttttcctgATGCCGGCAATAATGCAGTCGTTATCAGTTTGCAAGAAGCTCCTGTTGTCAGTGGAGATGTCAAAGTCATGTTTGAATCCAGTGCTGGTCTTCCTAAAGGTTATGAAGATTGTCCCTTTTATTTCTGGTTCAACACCTCTTTCATTGAGAATAACAGGCTGTACCTGTCCAGAGAAGAGCTAGACAACCCTCACAAAGCAAAGACCTGGGATATCTACAAGGAGGATTTCGGAGTGGAGCTGGCCTTTGGGGAGGTGTAA

Function

NR:

description
PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 isoform X1

GO: NA

KEGG:

id description
K18079 TPTE, TPIP; PTEN homologous phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016064 True 3503 mRNA 0.42 14 4476339 4490665

Neighbor

gene id symbol gene type direction distance location
AMCG00016063 NA coding downstream 24484 4443416 ~ 4451855 (-)
AMCG00016059 foxo1 coding downstream 48590 4424988 ~ 4427749 (-)
AMCG00016058 NA coding downstream 98179 4376445 ~ 4378160 (-)
AMCG00016053 lhfp,LOC105029023,LOC107670626,LOC107740377,LOC107593461 coding downstream 370608 4104731 ~ 4105731 (-)
AMCG00016048 NA coding downstream 528904 3928734 ~ 3947435 (-)
AMCG00016062 NA coding upstream 16798 4507463 ~ 4517486 (-)
AMCG00016065 vps36,LOC107701118 coding upstream 27905 4518570 ~ 4532263 (-)
AMCG00016073 LOC105011208,LOC102232466,LOC101073007,LOC103140675 coding upstream 85879 4576544 ~ 4582296 (-)
AMCG00016072 LOC102232466,LOC105915781,LOC105011208,LOC106514111,LOC104923823 coding upstream 110276 4600941 ~ 4603273 (-)
AMCG00016071 NA coding upstream 135919 4626584 ~ 4635627 (-)
G10740 NA non-coding downstream 102618 4371465 ~ 4373721 (-)
G10735 NA non-coding downstream 121043 4354853 ~ 4355296 (-)
G10715 NA non-coding downstream 306001 4166778 ~ 4170338 (-)
G10698 NA non-coding downstream 488384 3987653 ~ 3987955 (-)
G10696 NA non-coding downstream 497222 3977559 ~ 3979117 (-)
G10805 NA non-coding upstream 96058 4586723 ~ 4587875 (-)
G10806 NA non-coding upstream 101155 4591820 ~ 4592077 (-)
G10812 NA non-coding upstream 132066 4622731 ~ 4623216 (-)
G10821 NA non-coding upstream 147785 4638450 ~ 4638659 (-)
G10823 NA non-coding upstream 149124 4639789 ~ 4641030 (-)
AMCG00016049 NA other downstream 555836 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 933803 3528842 ~ 3542536 (-)
G10478 NA other downstream 1441156 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 1629982 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 1765654 2710399 ~ 2710685 (-)
AMCG00016074 NA other upstream 413191 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 3190246 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 3628556 8119221 ~ 8124033 (-)
G11326 NA other upstream 3700881 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 4332880 8823545 ~ 8827760 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G274458 NA non-coding NC_048567.1 CM023221.2 54733369 ~ 54733684 (+)
mexican tetra (Astyanax mexicanus) G229233 NA unknown NW_019170708.1 APWO02000306.1 173215 ~ 223313 (-)