G229233


Basic Information

Item Value
gene id G229233
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019170708.1
NCBI id APWO02000306.1
chromosome length 628061
location 173215 ~ 223313 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU311617
AAGGGTAAAGAAAATAGCATGgctccttcgatacatgtgcaGGAAAGCGCCGGATCCCCAGCTAttatacatcagctaacaaatgcctgtactctctctcagactctggctgctgatgcagaaacagcatgacccAAGGCTTATCTCTGATGTGATTGGACAGCTCCTGGGGTCTGATCTGAGCCGTGATTGGCCGCCTCTCAGTGGGATCCTCTGTGAGGGTCCTGTCTCTCTGCCAGCCCCATGGCATCGTGGGAAAGAGTGGGCAGGCCAGTGTTCTCTGTTACCCACCTgtttgtttgggtgtgtgtgtgcgtgcgtgtgtatacgtgtgtgtgtgtgtgtgtagatgatgtgtttgaatgtgtgtatTGCACAATGCACATGTGTATTGCAATTATTGATCTGTATAAGTATTGGAGAGCACATGCATGTatttgttcagtgtgtgtgtgtgtggtgtgtgtgtgtgagctatTTGTAGCGGGTCGGGCTCTCAGGGatccctctctccatctgtcGGCCAAACCCAGTTTAGTCCAAATCTCTCTACTGACcctctcagagagagagagagtgtgtgtgtgtgttgtgtgtgtgtgttgtgtgtgtgtttgtgcgctcTATTGTTTCCAACAGAGAAGTTAAAACGATGCTGcttttatctatatttttctctgtgaaacacacacacacacacacacacacacacacacacacaccacacacacacacacacacgtggtGATCTTGTGACTGTGATTCAGCTCTTCAGATAGTGACCTGTTGCATGTGCTGCTTTAATGAGCTCTTAATACTGTAATTCTTCTTaattataaagaataaaatattagaatttatataaatgtattaacagAAGAAGCCATGCAGGCCTGAGCCATGACACTACCTctaccatgtttcacagatgagctatCACAGTATGTTTGAGATCATGAgcagattcttttttttctccaaactttAACCTTTCCATCACATTGGTAAAAGTTAATCTTAAGCTTTATCTGCATGGGATTCTTTTTCCAGGGGGTAaattctggggtaattttctcttttataggtgtttttatcctctgtgattttattcctgtccagaacgatcatgtacgtgtttttctcagacgtcctctgagaaagttacagactgaattatctactgtttttctcggaactctgagtttcgtctcttcgcctttaataaaatagatgtttgtccactgccgcacaccgtaattacactttgggcacgccATGTtgggagatccacgttaaaaaaaaacacaacagcgagtggaaatggaggagctactgaacaccgtgatgtcatgtgaccaagaaaaagcctaaaaactcactggtcctcctgttttttcagttgcagtctggatgcaggagtttaatcactgagtagaagtgtgaaatattttaacagacgtccccctgagaaactaatccctttTGAATAGGGCTTTAGTTTCTTCAGTCCATAAAACTTGTTCAATTCCAATTTTTGttactttgtgtttttcatCTTCTGGTGAAGCTGAAAAGCACTCACAATgtttcatcaactgctgtggtcTACCTGCTCAAACTCTGTTActcagtacaccagtgacgactttcttcttcaggtcATTCCACACGGCTTTACCGGCTATGGAAAATATTTGTGCTCTAATAAGTTCTTATTGatttccatcttctctcagctttacaGTTGCTTGTTTTCCACCTAAAGACTCTCACAGCTCTCTGGTTTTTATGTTACTGCTTcctcctctaactataaataCTAGTTTGCTcagataaaacccaaatatgaaactgaactaaacagatataatcaatgtatcaggaaacacctgggcaACACATGACACACCTGACAtaccactccagtttctgaatcagtttctctgattttactatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattacaaataaaaatattctcatttagagcatttatttacagaaaatgagaaatgactgaaataacaagaaagatgcagagctttcagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311617 True 2118 TUCP 0.41 2 173215 223313

Neighbor

gene id symbol gene type direction distance location
LOC111196372 NA coding downstream 23432 143901 ~ 149783 (-)
LOC103022950 LOC108415555 coding upstream 86010 309323 ~ 402604 (-)
LOC103026596 LOC107667128,LOC107752991,LOC101471794,LOC100697574,LOC105908578,LOC105030909 coding upstream 181237 404550 ~ 420783 (-)
LOC103036421 NA coding upstream 228804 452117 ~ 470964 (-)
LOC103036123 LOC108237137,LOC106516477,LOC107745898,LOC106517404,LOC107376678,LOC108413863,LOC107552490 coding upstream 274956 498269 ~ 518817 (-)
tbc1d24 tbc1d24 coding upstream 305090 528403 ~ 546704 (-)
G229227 NA non-coding upstream 2443 225756 ~ 299349 (-)
G229253 NA non-coding upstream 16801 240114 ~ 254812 (-)
G229246 NA non-coding upstream 34932 258245 ~ 259980 (-)
G229226 NA non-coding upstream 62592 285905 ~ 366760 (-)
G229265 NA non-coding upstream 90191 313504 ~ 346157 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016064 LOC105011210,LOC107718790 coding CM030122.1 CM030122.1 4476339 ~ 4490665 (-)