G229227


Basic Information

Item Value
gene id G229227
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019170708.1
NCBI id APWO02000306.1
chromosome length 628061
location 225756 ~ 299349 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU311607
taattttctcagaggacgtctgagaaaaacacatacatgattgttctggacaggaataaaatcacagaggataaaaaaacccataaaagagaaaattacccagaaccccctgagaaactaatcccatccagatagggctttagccCACATAACACCTTTGtagataaagtattttttttattactgggTCAGGTGATTAAGATGATTTAAGGTGAGTCGTACAAATCGTGTAAACAAGTGTGAACACCTGGCTCTACAGCAACTAGAAACACAACTATAGcaataaatgtatgaatatctGCACTTTTAACCCACGAATATTAAACACTTTACTATTTTCCATTCAGTTACATTCAGTAAATAGTGTTGTATTATAACGTACAGCAGCGTCTCTGTAGAGGATGAGACTCAGAACTCATCCTAAACCTGCTCAAATTCACCAGTATCTCTCCTTATCAGAGagctgtaattgtttttttttaccaaaactgGTGAAATTATCCAAATATTATTTTgcttcaaattaaaaaaaattttgcACCGTATATAATAACCCTTCATATGAGCAAAATCATTTGCATGACTTCTCAAAGTAGCAAAGCAAACTCTTATCTCAGTTATTTCTTACAGTTACCATATAAATTCAATGATCTGCATTATCTGATTTCCCTCACAGAAATCtcctttatttataaaaaaaaaatatatatatattagaacagaactactatataaatatattattacgtATATATGATTACATGCGTAAAAATGTCTATAATAGCTTATATTAATATTCCCACATAAGAAATTAATATACGGTATATTAAAATAGAGACGGACTGACTGATGGGataaatactgttcactgttttaTGGCTGAGACTTTTGCACATAActatagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcattaAATAGaggcatttaaaaactgctgtattgtgtgtgtgagagtgtgtgtgatgttttgcGATGAGTGTAAGAGGTTAATGTCAGACAGAGCTGTAATTTTGCtaattatattgtaaataagagtgaaggtgtgtgtgtgtgtgtggggggggggataCGAACAGAGTTTTTATTCTACTGTTTTTATGGAGTTTAAACAGGTTTGgcttttaaacagtaaatgtgAGAGtatgtttacagtgtgtgtgtgtgtgtgtgtgtggta
>TU311608
taattttctcagaggacgtctgagaaaaacacatacatgattgttctggacaggaataaaatcacagaggataaaaaaacccataaaagagaaaattacccagaaccccctgagaaactaatcccatccagatagggctttagccCACATAACACCTTTGtagataaagtattttttttattactgggTCAGGTGATTAAGATGATTTAAGGTGAGTCGTACAAATCGTGTAAACAAGTGTGAACACCTGGCTCTACAGCAACTAGAAACACAACTATAGcaataaatgtatgaatatctGCACTTTTAACCCACGAATATTAAACACTTTACTATTTTCCATTCAGTTACATTCAGTAAATAGTGTTGTATTATAACGTACAGCAGCGTCTCTGTAGAGGATGAGACTCAGAACTCATCCTAAACCTGCTCAAATTCACCAGTATCTCTCCTTATCAGAGagctgtaattgtttttttttaccaaaactgGTGAAATTATCCAAATATTATTTTgcttcaaattaaaaaaaattttgcACCGTATATAATAACCCTTCATATGAGCAAAATCATTTGCATGACTTCTCAAAGTAGCAAAGCAAACTCTTATCTCAGTTATTTCTTACAGTTACCATATAAATTCAATGATCTGCATTATCTGATTTCCCTCACAGAAATCtcctttatttataaaaaaaaaatatatatatattagaacagaactactatataaatatattattacgtATATATGATTACATGCGTAAAAATGTCTATAATAGCTTATATTAATATTCCCACATAAGAAATTAATATACGGTATATTAAAATAGAGACGGACTGACTGATGGGataaatactgttcactgttttaTGGCTGAGACTTTTGCACATAActatagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311607 True 1218 lncRNA 0.34 2 241856 299349
TU311608 False 966 lncRNA 0.33 2 225756 299349

Neighbor

gene id symbol gene type direction distance location
LOC111196372 NA coding downstream 75973 143901 ~ 149783 (-)
LOC103022950 LOC108415555 coding upstream 9974 309323 ~ 402604 (-)
LOC103026596 LOC107667128,LOC107752991,LOC101471794,LOC100697574,LOC105908578,LOC105030909 coding upstream 105201 404550 ~ 420783 (-)
LOC103036421 NA coding upstream 152768 452117 ~ 470964 (-)
LOC103036123 LOC108237137,LOC106516477,LOC107745898,LOC106517404,LOC107376678,LOC108413863,LOC107552490 coding upstream 198920 498269 ~ 518817 (-)
tbc1d24 tbc1d24 coding upstream 229054 528403 ~ 546704 (-)
G229265 NA non-coding upstream 14155 313504 ~ 346157 (-)
G229234 NA non-coding upstream 53124 352473 ~ 355910 (-)
G229267 NA non-coding upstream 69343 368692 ~ 369155 (-)
G229268 NA non-coding upstream 72706 372055 ~ 372504 (-)
G229270 NA non-coding upstream 78026 377375 ~ 378974 (-)
G229233 NA other downstream 2443 173215 ~ 223313 (-)

Expression


Co-expression Network