AMCG00016558 (rpl21,LOC107591224)


Basic Information

Item Value
gene id AMCG00016558
gene name rpl21,LOC107591224
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25080674 ~ 25085097 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016558
attattcagcgCAGGAGAGTGAATCACGGCGATTGAGAAGTATGTGTATTTTCTAGTCAGGCGGCAGTGAGGACCACCTGAATTACAATGTGTAAGGCGGAGCGAGGGGTCCTGCACTCTCTCTTTCCGCCGGACCCGCCATCTTGCGAAGAAGCAGGGTTAAACAGCCAACATGACGAACACCAGAGGCAAGAGGAGGGGGACGAGGTATATGTTCGCCAGGCCCTTCCGTAAACATGGTCCCGTCCCTCTGTCCACTTACATGCGTATCTACAAGAAAGGAGATATCGTTGACATCAAGggaacagggacagtccagaaGGGAATGCCCCACAAGTGCTACCATGGCAAGACTGGCAGGATTTACAATGTGACCCAGCATGCTGTGGGCATCATTGTCAACAAGCAGGTCAAGGGCAAGATCCTGGCCAAGAGAATCAACGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGCTTCCTGCAGCGAGTGAAGGagaatgagaagaagaagatcGAGGCCAAGGAGAGTGGCACCTGGGTGGAGCTTAAACGCCAGCCGGCTGCTCCCCGTGAGGCTCACTTTGTCAGCACCAAGAACAACGAGCCCCAGCTGCTGGAGCCCATCCCCTACGAGTTCATGGCCTAACTGTCCCGCACACCCAATAAACACGTTCACACAAATGTCCggttgcctgtgtgtgtttctctagACTCGGAAATGCAGATTAATTTCCCAGAGCAGTGATGGGTCAGAGTGTGCGTCCGCCTCCGCTGTGGTCAGTGCTGCTGCTCGATGATGCTCTTCCTCCTTCGATTGCCCTGAGCGGCAGTGTGAGATTGAATATATTTCACCGGTGAACTGAGAGCAGACCAGCACTGATGCGCTGGTGCCTGGGCAGCCCCTCATGGGTCAGTGTAGTGCAGGGCAGGGCTGGGCAACTGGGGTCCTCACAGGTGGCTGGTTTCTATTCCCTGTCAGGGttttattacttatttgaaGTAGTTATGAGGAAAATAAGTTGGATTACCTGTTCATTCTGAGTCTTGATCAGATTGCTAATTGAAGTTATAAATGCTGCAGGAGCCCAGCTCCAGCACTGCAGCTGCAGAGCCCTGTCCCGAGCCTCACAGTACCTCCCAGTTATGGGTTTTAAGCAAAAGTGGTCTTCATTATAGTCAGGAGAGTCACTCTCCTCTGCATTGGTTTAGTTTAAAACATTCTGAATAGCCCCCTGTGATTTTAGTAATGTTTACATCTCTGAGGGAGAGAACAACTGAACTAATAATAGACTGCCCTTCTGTAAACCTTAAAAAGCctttgtgcattaaaaaaaaaaaagtttacattcTGTGGCTCCGCGGTGCCGAGGACCTGTATGATCTTTTGATCTTGTAGAGGCTTCTGCAGTAATGTAGGATTAGCCTTTGAAATGCCAATACTATCCCTGCACTTAATCATAACTGCGTCCTGGTGCGTGGCCCTGCTGAACGCTGTGTATTGTCTCGCTGCTGTTGGTGAAGACACTAATGGCAGGGACTGTTTCAACTGAGTTTGTGTTAAATACACTCAGTGCAGTAGGAAAGGGCCAAGAATGGGTCCACAATGgttcagtatgtgtgtgtatacacgtGTATATATCCATCCTAGCAGACCCATTTAAAAGCCTCTAtaacagattaataaaatgtatctgcaacagtttaacttttaataaatgcttttattggATCTTTCTCTTCCATCAAGTATGTGGTCTAAAAGCAGTGTGGGTTAGTGGCCCCTCTGCTTTAGTGTGACTGCAGTGTGGGTTAGTGCCCCTCTGAATCACTGCTGGCAAAGGCGGGGCAGCTGTCTCTCGCTGACAGCCGGGCTGTGTGACCCGGGCAGCCAGCTCTGATTGCCCATCATCAGTGCGGCCCTGGGGCTGATTGCTAATTGCAGTGCTGATTGCTGTGCTGATTTCAGGGGCCTCGTCCAGAATATCAACACCACTGCAGAAGCCCAGCAGCAGTCTGAGAGCTCTGAATTAATTTCCATGGTTTCTGATGCTGGCAGTAGAAAGAAGTAAGATGTCGAATTGAGATTCTAATAAAGAGCTGAGTTAAATGAGagtttccttgt
>TU17791
TGCTCTTCCTCCTTCGATTGCCCTGAGCGGCAGTGTGAGATTGAATATATTTCACCGGTGAACTGAGAGCAGACCAGCACTGATGCGCTGGTGCCTGGGCAGCCCCTCATGGGTCAGTGTAGTGCAGGGCAGGGCTGGGCAACTGGGGTCCTCACAGGTGGCTGGTTTCTATTCCCTGTCAGGGttttattacttatttgaaGTAGTTATGAGGAAAATAAGTTGGATTACCTGTTCATTCTGAGTCTTGATCAGATTGCTAATTGAAGTTATAAATGCTGCAGGAGCCCAGCTCCAGCACTGCAGCTGCAGAGCCCTGTCCCGAGCCTCACAGTACCTCCCAGTTATGGGTTTTAAGCAAAAGTGGTCTTCATTATAGTCAGGAGAGTCACTCTCCTCTGCATTGGTTTAGTTTAAAACATTCTGAATAGCCCCCTGTGATTTTAGTAATGTTTACATCTCTGAGGGAGAGAACAACTGAACTAATAATAGACTGCCCTTCTGTAAACCTTAAAAAGCctttgtgcattaaaaaaaaaaaagtttacattcTGTGGCTCCGCGGTGCCGAGGACCTGTATGATCTTTTGATCTTGTAGAGGCTTCTGCAGTAATGTAGGATTAGCCTTTGAAATGCCAATACTATCCCTGCACTTAATCATAACTGCGTCCTGGTGCGTGGCCCTGCTGAACGCTGTGTATTGTCTCGCTGCTGTTGGTGAAGACACTAATGGCAGGGACTGTTTCAACTGAGTTTGTGTTAAATACACTCAGTGCAGTAGGAAAGGGCCAAGAATGGGTCCACAATGgttcagtatgtgtgtgtatacacgtGTATATATCCATCCTAGCAGACCCATTTAAAAGCCTCTAtaacagattaataaaatgtatctgcaacagtttaacttttaataaatgcttttattggATCTTTCTCTTCCATCAAGTATGTGGTCTAAAAGCAGTGTGGGTTAGTGGCCCCTCTGCTTTAGTGTGACTGCAGTGTGGGTTAGTGCCCCTCTGAATCACTGCTGGCAAAGGCGGGGCAGCTGTCTCTCGCTGACAGCCGGGCTGTGTGACCCGGGCAGCCAGCTCTGATTGCCCATCATCAGTGCGGCCCTGGGGCTGATTGCTAATTGCAGTGCTGATTGCTGTGCTGATTTCAGGGGCCTCGTCCAGAATATCAACACCACTGCAGAAGCCCAGCAGCAGTCTGAGAGCTCTGAATTAATTTCCATGGTTTCTGATGCTGGCAGTAGAAAGAAGTAAGATGTCGAATTGAGATTCTAATAAAGAGCTGAGTTAAATGAGa

Function

symbol description
rpl21 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in hypotrichosis 12. Orthologous to human RPL21 (ribosomal protein L21).

NR:

description
PREDICTED: 60S ribosomal protein L21

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02889 RP-L21e, RPL21; large subunit ribosomal protein L21e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016558 True 2131 mRNA 0.49 6 25080674 25085097
TU17791 False 1315 lncRNA 0.46 1 25083773 25085087

Neighbor

gene id symbol gene type direction distance location
AMCG00016557 NA coding upstream 31122 25034938 ~ 25049552 (+)
AMCG00016559 cdk8 coding upstream 49621 25020845 ~ 25031053 (+)
AMCG00016561 NA coding upstream 60453 25016040 ~ 25020221 (+)
AMCG00016553 NA coding upstream 160638 24912011 ~ 24920036 (+)
AMCG00016554 nup58 coding upstream 170660 24895102 ~ 24910014 (+)
AMCG00016560 NA coding downstream 2514 25087611 ~ 25088937 (+)
AMCG00016568 NA coding downstream 18590 25103687 ~ 25106170 (+)
AMCG00016567 gsx1,LOC106603173,LOC106563638,LOC107560336,LOC107719766 coding downstream 97134 25182231 ~ 25183232 (+)
AMCG00016576 NA coding downstream 115045 25200142 ~ 25200540 (+)
AMCG00016571 pan3 coding downstream 156917 25242014 ~ 25262456 (+)
G14177 NA non-coding upstream 661067 24419358 ~ 24419607 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding upstream 704847 24370326 ~ 24375827 (+)
G14136 NA non-coding upstream 741826 24336970 ~ 24338848 (+)
G14132 NA non-coding upstream 759355 24317800 ~ 24321319 (+)
G13979 lipt2 non-coding upstream 1214874 23862215 ~ 23865800 (+)
G14354 NA non-coding downstream 36986 25122083 ~ 25122392 (+)
G14363 NA non-coding downstream 59485 25144582 ~ 25144782 (+)
G14383 NA non-coding downstream 184741 25269838 ~ 25270195 (+)
G14444 NA non-coding downstream 272790 25357887 ~ 25359035 (+)
G14445 NA non-coding downstream 275374 25360471 ~ 25360808 (+)
G14326 NA other upstream 69987 25007962 ~ 25010687 (+)
AMCG00016537 NA other upstream 518867 24479706 ~ 24561807 (+)
G14057 NA other upstream 970492 24080017 ~ 24110182 (+)
AMCG00016506 NA other upstream 1135650 23938051 ~ 23945024 (+)
AMCG00016502 NA other upstream 1197728 23866267 ~ 23882946 (+)
G14361 NA other downstream 48101 25133198 ~ 25133879 (+)
AMCG00016566 NA other downstream 65251 25150348 ~ 25157461 (+)
AMCG00016584 NA other downstream 285199 25370296 ~ 25404840 (+)
AMCG00016598 NA other downstream 640156 25725253 ~ 25758926 (+)
AMCG00016607 NA other downstream 855431 25940528 ~ 25950176 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_04613416_04615346 RL21, MGC80700, RPL21P28, RPL21, GM10155, GM9104, RPL21.L, GM10163, GM10045, GM10095, RPL21-PS8 coding CI01000018 null 4613223 ~ 4615360 (+)