CI01000018_04613416_04615346 (RL21, MGC80700, RPL21P28, RPL21, GM10155, GM9104, RPL21.L, GM10163, GM10045, GM10095, RPL21-PS8)


Basic Information

Item Value
gene id CI01000018_04613416_04615346
gene name RL21, MGC80700, RPL21P28, RPL21, GM10155, GM9104, RPL21.L, GM10163, GM10045, GM10095, RPL21-PS8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4613223 ~ 4615360 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04613416_04615346.mRNA
CTATATATATACATGCTACCATTTTACATTCAATTATATTGTACAGTCAGTGATGACCAAAGGCTGCAAACCAAGTGTGATAATATTCTCTAGTATTGTAGTTGTAGGTATTTAGCCTAATACAACGAGAGAGTGTTTAACTAATTTTTTTAAACTTTATTTTTACCTCTTTTGAACCCAGTAATCAGGCATCATGACAAACACCAGAGGCAAGAGGAGGGGGACCAGGTATATGTTTGCCAGGCCCTTCCGCAAGCATGGTCCAATCCCTCTGTCCACCTACATGCGCATCTACAAAAAGGGTGATATTGTAGACATCAAGGGCACAGGAACCATCCAGAAGGGCATGCCTCATAAATGCTACCATGGCAAAACAGGACGTGTTTATAATGTTACACAGCATGCTGTAGGCATCATTGTCAACAAGCAAGTCAAGGGCAAGATCCTGGCTAAGAGAATTAATGTGCGTATCGAGCACATTAAGCACTCAAAGAGCAGAGACAGCTTCCTGCAGCGCGTTAAGGAGAACGAGAAGAAGAAATTGGAGGCCAAGAAGCAGGGCACCTGGATTGAGCTTAAACGCCAGCCTGCTGCTCCACGGCCAGCACACTTTGTCAGCACCAAGAACAACGAGCCTCAGGTCCTAGAGCCCATCCCCTACGAGTTCATGGCATAAGTCTGCTGACCAAA

Function

symbol description
rpl21 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in hypotrichosis 12. Orthologous to human RPL21 (ribosomal protein L21).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K02889 RP-L21e, RPL21; large subunit ribosomal protein L21e

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04613416_04615346.mRNA True 690 mRNA 0.45 5 4613223 4615360

Neighbor

gene id symbol gene type direction distance location
CI01000018_04598617_04598799 NA coding upstream 14382 4598285 ~ 4598841 (+)
CI01000018_04579960_04588477 WASF3B, WASF3 coding upstream 24640 4579893 ~ 4588583 (+)
CI01000018_04563971_04573228 CDK8, CDK8.S coding upstream 39764 4563926 ~ 4573459 (+)
CI01000018_04474455_04481868 SHISA2 coding upstream 131309 4474455 ~ 4481914 (+)
CI01000018_04449934_04462663 NA coding upstream 150392 4449384 ~ 4462831 (+)
CI01000018_04623186_04625739 NA coding downstream 7392 4622752 ~ 4625849 (+)
CI01000018_04649969_04650862 NA coding downstream 33268 4648628 ~ 4650914 (+)
CI01000018_04654210_04656581 PDX1 coding downstream 38369 4653729 ~ 4657095 (+)
CI01000018_04677346_04694247 PAN3 coding downstream 61799 4677159 ~ 4694627 (+)
CI01000018_04823817_04825235 SAT1B, SAT1, SAT1A.1, SAT1A.2 coding downstream 208457 4823817 ~ 4825299 (+)
G104635 NA non-coding upstream 13121 4599015 ~ 4600102 (+)
G104548 NA non-coding upstream 59142 4539170 ~ 4554081 (+)
G104532 NA non-coding upstream 129169 4483219 ~ 4484054 (+)
G104594 NA non-coding upstream 158904 4454104 ~ 4454319 (+)
G104605 NA non-coding downstream 492 4615852 ~ 4616633 (+)
G104659 NA non-coding downstream 123917 4739277 ~ 4740746 (+)
G104660 NA non-coding downstream 125484 4740844 ~ 4741148 (+)
G104662 NA non-coding downstream 127121 4742481 ~ 4743415 (+)
G104664 NA non-coding downstream 133575 4748935 ~ 4749640 (+)
CI01000018_04368179_04375192 NA other upstream 239811 4368179 ~ 4375866 (+)
G104258 NA other upstream 921704 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 2627912 1924489 ~ 1985311 (+)
G102895 NA other upstream 3027561 1582913 ~ 1585662 (+)
G104670 NA other downstream 140441 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 601320 5216452 ~ 5222616 (+)
G106429 NA other downstream 2266251 6881611 ~ 6886325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016558 rpl21,LOC107591224 misc CM030122.1 CM030122.1 25080674 ~ 25085097 (+)