CI01000018_04654210_04656581 (PDX1)


Basic Information

Item Value
gene id CI01000018_04654210_04656581
gene name PDX1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4653729 ~ 4657095 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04654210_04656581.mRNA
ATATAAAAGTAACTGTTTTGCGTCTTCGCACAACATTTTCTTTGTTTTTATTGTAGCCTACACTTTTTACCGGTTCGTTATTCAATGAAAAGTGGCAGCCTTTTTCGCGGAGAGCAGAGATACGGATCCTCCGATTCACCTGTCTTTGCAGTAGTATTTAACAGGTGAGCACATATAGTCGCAGGCAAACAGAGAGTGTTTGCCAAGGGCATTGATTTGAGCATGGTCAGTTCTGTTCAATTATTGTCAAACCGCGGGGCAGTCGAAAGGAAACACGAACAGAATCTACTGCCAGTTGACAGCTTTGTGTAAACAGTGAAACCAATGGTGCAGCAGGGTCACATGGTCACGGTGGCACACCTATGAGGCCCTAGAACGGCGCCAGACGCTCAGACTGCAGGTAGAGCAGAGGTCCTGATCAGGGGCAGGGCGCTGGCTCATGTGCTCGTGTACAGCACGGTTTCCCCGGTCTGTGGCAATCATGAATCGGGAAGAGCACTATTACCCACCTAACCATCTGTACAAGGACTCTTGCGCCTTCCAGAGACACCCCAGCGAAGACTACTGCCAAAACCCTCCACCGTGTCTCTATATGAGTAGACAGACTCAGTCCGTCTACGCCTCGCCGTCCTTGGGCGCACAGGACCAGCCAAATCTTACCGACATTACCTCTTATAACATGTCGACCCGGGATGATCTAGCAGGGCCTCATCTTCACCTTCCTCAGACTCCACAGACATCTCTACAGACGCTCGGGGGTTACGGAGACTCTCTTGACCTGTGCGGGGATCGGAACAGATATCATCTCCCATTCCCCTGGATGAAGTCAACTAAATCTCACACGCACGCCTGGAAAGGACAGTGGACAGGCCCTTACATGGTAGAGGCCGAGGAGAACAAGCGCACGCGGACAGCTTACACCAGAGCTCAGCTGCTCGAGCTCGAGAAAGAGTTCCTCTTCAACAAGTACATTTCTCGCCCACGCCGCGTGGAGCTCGCGCTCACCCTCAGCCTCACCGAGAGACACATCAAGATCTGGTTCCAAAACCGACGCATGAAGTGGAAAAAGGAGGAGGACAAGAGGAGAGCCAGAGGAGTGGACCCTGAACAGGATTCCTCCATCACGTCCGGGGATTTGAAGGATGAGTCGTGTGTCGCCCCGGGAACTGTAGCGGGACCCCCCTCACCCCTGCACACACATGTACCTCCAGTTCCACAAGACTCGTAAAACACACACTGTCCAAAAGAGACATCCGAGACTGTATCATCAATGCAATCTATCAGCCTGTCAGTGCCATCGATGAGTGGAACTGTAAGTGTGCAACCAGTACCGTATTGTGACATTCCACTCTCACAGTGACAATGACAACATTTGGTCAAATCCTGTATATTGGCAGTAGGGGGCGATCAGTTGCGTGAGAGACAAAGCTTCTGTAGAGTCAATTTCGTGTTTTCTGTGTAGGCTAATCGAAATTCAGCACGCCATTGAAACACCAAATGTTCATTATCAAATATATTCTTGGGCATTGTTAAAATTTGAATGTATTCATTTTTTATAGATAGACAAAAAATAGCTTCTTAATTTAAATACAAATGGGTAAATACCTCTGTCATTACAACATTCTTCCAACAAAATTCATAATATTTATACAGGTGAGCTAGGCCTAGCCTATAAACCAATTAAACGCATATGGGCAGGGTGGCGTCATATCACTTGTTATAATTTGTTGCAAACAAAAATA

Function

symbol description
pdx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within determination of left/right symmetry; endocrine pancreas development; and glucose homeostasis. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; endoderm; intestinal rod; liver primordium; and somite. Used to study diabetes mellitus and diabetic retinopathy. Human ortholog(s) of this gene implicated in cerebral infarction; hyperglycemia; maturity-onset diabetes of the young type 4; pancreatic agenesis; and type 2 diabetes mellitus. Orthologous to human PDX1 (pancreatic and duodenal homeobox 1).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K07594 IPF1, PDX1; insulin promoter factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04654210_04656581.mRNA True 1742 mRNA 0.48 2 4653729 4657095

Neighbor

gene id symbol gene type direction distance location
CI01000018_04649969_04650862 NA coding upstream 2815 4648628 ~ 4650914 (+)
CI01000018_04623186_04625739 NA coding upstream 27880 4622752 ~ 4625849 (+)
CI01000018_04613416_04615346 RL21, MGC80700, RPL21P28, RPL21, GM10155, GM9104, RPL21.L, GM10163, GM10045, GM10095, RPL21-PS8 coding upstream 38369 4613223 ~ 4615360 (+)
CI01000018_04598617_04598799 NA coding upstream 54888 4598285 ~ 4598841 (+)
CI01000018_04579960_04588477 WASF3B, WASF3 coding upstream 65146 4579893 ~ 4588583 (+)
CI01000018_04677346_04694247 PAN3 coding downstream 20064 4677159 ~ 4694627 (+)
CI01000018_04823817_04825235 SAT1B, SAT1, SAT1A.1, SAT1A.2 coding downstream 166722 4823817 ~ 4825299 (+)
CI01000018_04834805_04838328 ROPN1L coding downstream 177396 4834491 ~ 4838400 (+)
CI01000018_04843213_04852105 ANKRD33BA coding downstream 184786 4841881 ~ 4853351 (+)
CI01000018_05217404_05218896 NA coding downstream 560309 5216452 ~ 5222616 (+)
G104605 NA non-coding upstream 37096 4615852 ~ 4616633 (+)
G104635 NA non-coding upstream 53627 4599015 ~ 4600102 (+)
G104548 NA non-coding upstream 99648 4539170 ~ 4554081 (+)
G104532 NA non-coding upstream 169675 4483219 ~ 4484054 (+)
G104659 NA non-coding downstream 82182 4739277 ~ 4740746 (+)
G104660 NA non-coding downstream 83749 4740844 ~ 4741148 (+)
G104662 NA non-coding downstream 85386 4742481 ~ 4743415 (+)
G104664 NA non-coding downstream 91840 4748935 ~ 4749640 (+)
G104665 NA non-coding downstream 92631 4749726 ~ 4750331 (+)
CI01000018_04368179_04375192 NA other upstream 280317 4368179 ~ 4375866 (+)
G104258 NA other upstream 962210 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 2668418 1924489 ~ 1985311 (+)
G102895 NA other upstream 3068067 1582913 ~ 1585662 (+)
G104670 NA other downstream 98706 4755801 ~ 4759768 (+)
G106429 NA other downstream 2224516 6881611 ~ 6886325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022922 pdx1 coding NC_007135.7 CM002908.2 21684189 ~ 21686706 (+)