CI01000018_04368179_04375192


Basic Information

Item Value
gene id CI01000018_04368179_04375192
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4368179 ~ 4375866 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04368179_04375192.mRNA
ATCTCACACGGAAAGCAAGAAGCGGAGAAAGAGAGTTTACTCAGAGCAAAAAGAAACGAAGTCTTAGTGGTGACCATCCGAACATGAGTGAGTTGAGGATTGTTCTGCTGGGAAAAAATAAATCAGCAAACAACAGAGTTAGAAACTTTATCCTAGGAATAGATGAGAGTGGAACAGCATCTCCACCTGATGTACATCAGCTCATCAAGAGACCTCATGCGATCATACTCATACTGCAGCATCATGATGACTTAAGTGAGGACAACATTGGGAGAATAAAATATGTGTTGAAACAATTTCATGAGAAAGCGATTACACATACAATCGTGCTAACTATTGAGGAACTGAGCTCCCAGCTAACTTTAATAAATAATGATGTAAAACAATTAATAAATGAATGTGGAGGGGGACATGTTCAGTTTGATAAAAAAAAAGATTCAGGATTCTGCTCTAAGATAATTCAAATAGTAGAGAAGATAAAGGAAGAATATGAAGAGTTTCTCAAATGTGAGATATTTGATGATGCAGAAGACGGAACATCAGTGGAAAAAAAGCAGAGCACATCTGAGGATTCAGCCAGAGAGGAAGCGGAAAAGGAGGAGGGAAAAGGTGGAGGAAGATCAACTGTTCCTGGAAAAGGAAAAATTAACTTTGTGCTGTGTGGAAGTGATACAAAACTCAAGACCTCAGTGTCCAAAATGTTACGAGGGAAAACAATAAAAGAATCTTCATCCACACGTCAGAGAGAGTCTAGTTTAGTGTGTGTGAAGAAAGAGGTGAACATACACGGACGGCACCTCACTGTGGTGGAGCTTCCAGCTCTCACTCAGCTCTCAGAAGAGGAAGTGATGGACCAGACTCTCCAGTGTGTGTCTCTCTGTGATTCTGGAGTTCATCAATTCTTCCTTATTATTCCTGTTGGTCTACTTACTGATGGAGACAAAAAAGAAATGGAGAAGATCAATAAGATATTTTACTCCAAAGACCACTTCTCTGTTCTTTTCACAACAGATCTCACTGATGACAAAAATGCGACAGATTTTGTGACATCCAAAGAATCTCAGAGGTTTGTCGATCTTTATGGGTGTTGGTACGAGGTGATAGGGTTGAAGGAACATAGAAGAGGAACACAGATCTCTGACCTGTTGGAATGTATAGAGAGCTTTAAAAAGAAACCCTATTCACTTCAGATGTACATAAAATCTCAAGAAAAGAGAGTCAGGGATGAACTAGAGGAAAAGCTGAGTAAAATGAAGAGCACAATCAAAGAGTTGCAGCAGAAGATTCAAGAGGGAGATGAAGATGCATCAACAGATTCAGGCTCTTTAAGGATAGTGATGATTGGAAAGACTGGAAATGGAAAAAGTGAAACAGGAAACACCATCCTCGGGAGAGAAGAGTTTCACACTGAAGCCAGTTCAGATTCTGTGTCGACTGTCTGCATGAAAGGAGTCGGTGAAGTTCATTGTAAATCAGTAGCTGTTGTTGATACTCCAGGTCTCTTTGACACCACACTGTCAAATGAACAAGTGCAGGAGGAAATTGTGAAATGTGTTTCACTGTCAGCACCTGGACCCCATGTCTTCATTATTGTCTTGAGTGTGGGAAGATTCACAAAGGAGGAGAAAGACACTGTGGATCTGATAAAGAAGATTTTTGGACCAAATGCTGCACAGTTCAGCATTGTTCTCTTCACGAGAGGAGATGACCTGAAAAATCAAACAATAGAACAATATGTAGAGAAAAGTAAAAGTGCAGATCTCAAGAAATTGATCAGGGACTGTGGGAACAGGTTTTTGGTTTTTAATAACAGAGAAAAGGATGATCACACACAAGTTACTCGGCTTTTTAAGATGATAGAAGAAGTGAAAAAATCTAATAAGGGGCAGTATTTCACAAACAGCATGTTTGAAGAAGCAGAGATGTCCATTAAAAAGAGAGTGGAGGAAATACTGAAAGAAAAAGAGAGAGAAATCCAGGCAAACAATGCAGAGAGAGATGGAAAATCAGAGATCACTCTGAAAAACAGCAAAAAGAAAAAGAAGAGCAGGATAAAAAGAGAGAAGAGAAATATAAACAAGATCAAAAAAAGCTCAAAGAAGAGCGAAAGCATGCCATTGAACAATTAAAAAGGAAACAAGAGGAAACTGAAAGAAGACAATTGGAGGAACAAAAGAAGATTAGGGAGGAAGAGGAAGAGAGACAGAGATGGCAAAGAAGAATAAAAGAGCATGAAAATGACAAAAAGGAGATTCAAGAGAACATTAAACAACAACAGAGAGAATGGGAAGAGCAAAAGAAAAGACAGATGAGAGAACGAGAGGAAGAGGACAGAAAGCAAAAAGAGACACGAGGAACAATTGAGAGAAAAAGAAGAGGAAATGGAGAAAATAAGAAAAAAATTTCAAAGAGAAAGAGATGAAGAAAGACAAAAGATAGAGGAGGAGAGACAGCAGTGGAGAGATGCAGAGAAAAGAGAGAGAGAGCGAAAAGAGAGAGAATTTGAAGAAATGAAAAAACATTATGAACGAAAGAAAAGAAGAGTGGGAGAGAACTAAACGAAACGATGATAAGAGAAGAGAAGAAGAGAGAAAGAGATGGAGGAAAATGATAGAAGATCTTAAACATGAGCAAGAGCAGGAGATCAGCAGAAGAGATACAGAGGAGAAAGAGAGAAAAGAAAAAGAAAAAAAAGAGCGTGATAAAATGAAAGAGGAATATGAACAGAAAATTAAGTATATAGAGAAGGAACATGAAGATGAAGCCAGAAAGCAAGCAGAGGAATTTAATGAGTTCAGAGAGA
>TU118875
AAAAAGATTCAGGATTCTGCTCTAAGATAATTCAAATAGTAGAGAAGATAAAGGAAGAATATGAAGAGTTTCTCAAATGTGAGATATTTGATGATGCAGAAGACGGAACATCAGTGGAAAAAAAGCAGAGCACATCTGAGGATTCAGCCAGAGAGGAAGCGGAAAAGGAGGAGGGAAAAGGTGGAGGAAGATCAACTGTTCCTGGAAAAGGAAAAATTAACTTTGTGCTGTGTGGAAGTGATACAAAACTCAAGACCTCAGTGTCCAAAATGTTACGAGGGAAAACAATAAAAGAATCTTCATCCACACGTCAGAGAGAGTCTAGTTTAGTGTGTGTGAAGAAAGAGGTGAACATACACGGACGGCACCTCACTGTGGTGGAGCTTCCAGCTCTCACTCAGCTCTCAGAAGAGGAAGTGATGGACCAGACTCTCCAGTGTGTGTCTCTCTGTGATTCTGGAGTTCATCAATTCTTCCTTATTATTCCTGTTGGTCTACTTACTGATGGAGACAAAAAAGAAATGGAGAAGATCAATAAGATATTTTACTCCAAAGACCACTTCTCTGTTCTTTTCACAACAGATCTCACTGATGACAAAAATGCGACAGA

Function

NR:

description
LOC560949 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04368179_04375192.mRNA False 2803 mRNA 0.39 7 4368179 4375866
TU118875 True 610 TUCP 0.41 2 4370186 4373412

Neighbor

gene id symbol gene type direction distance location
CI01000018_04322915_04335655 NA coding upstream 32339 4322915 ~ 4335840 (+)
CI01000018_04265169_04284528 DRD3 coding upstream 83559 4265169 ~ 4284620 (+)
CI01000018_04259548_04261044 NA coding upstream 106609 4259548 ~ 4261570 (+)
CI01000018_04243337_04245807 NA coding upstream 122189 4243024 ~ 4245990 (+)
CI01000018_04237268_04237554 NA coding upstream 130625 4237090 ~ 4237554 (+)
CI01000018_04378035_04382378 NAA50 coding downstream 2169 4378035 ~ 4383496 (+)
CI01000018_04384928_04393242 USF3 coding downstream 9062 4384928 ~ 4393358 (+)
CI01000018_04449934_04462663 NA coding downstream 73518 4449384 ~ 4462831 (+)
CI01000018_04474455_04481868 SHISA2 coding downstream 98589 4474455 ~ 4481914 (+)
CI01000018_04563971_04573228 CDK8, CDK8.S coding downstream 188060 4563926 ~ 4573459 (+)
G104522 NA non-coding upstream 65217 4302761 ~ 4302962 (+)
G104521 NA non-coding upstream 65745 4302199 ~ 4302434 (+)
G104519 NA non-coding upstream 74304 4293637 ~ 4293875 (+)
G104458 NA non-coding upstream 235144 4123943 ~ 4133035 (+)
G104452 NA non-coding upstream 258004 4109923 ~ 4110175 (+)
G104594 NA non-coding downstream 78238 4454104 ~ 4454319 (+)
G104532 NA non-coding downstream 107353 4483219 ~ 4484054 (+)
G104548 NA non-coding downstream 163304 4539170 ~ 4554081 (+)
CI01000018_04598617_04598799 NA non-coding downstream 222510 4598285 ~ 4598841 (+)
G104635 NA non-coding downstream 223149 4599015 ~ 4600102 (+)
G104258 NA other upstream 676660 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 2382868 1924489 ~ 1985311 (+)
G102895 NA other upstream 2782517 1582913 ~ 1585662 (+)
G104670 NA other downstream 379935 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 840814 5216452 ~ 5222616 (+)
G106429 NA other downstream 2505745 6881611 ~ 6886325 (+)

Expression


Co-expression Network