CI01000018_01924489_01985310 (SEMA5A)


Basic Information

Item Value
gene id CI01000018_01924489_01985310
gene name SEMA5A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 1924489 ~ 1985311 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_01924489_01985310.mRNA
TTACAGGAGGCTGAATGGCATTGCGATGAGTTTACCAAAGGAGCCTGTTTCAGTCGGGGCAAATCAGAGGAGGAGTGCCAGAATTACATCCGTGTTCTACTCGTCAACGGTGACAGGCTGTTTACATGTGGAACAAATGCATTCACTCCTATTTGCACCAATCGCACGCTGACTAACCTGACCGAGGTTCATGATCAAATCAGTGGGATGGCACGGTGCCCCTATAACCCTCTGCATAATTCCACCGCCCTCATCACTTCCAGCGGGGAGCTCTATGCCGCCACTGCTATGGACTTTTCCGGCAGGGACCCGGCAATCTACCGCAGCCTGGGTGGACTTCCTCCTCTGCGTACTGCTCAGTACAACTCCAAATGGCTTAATGAGCCCAACTTCGTTTCCTCCTATGACATCGGCAACTTCACCTACTTCTTCTTCCGTGAGAACGCTGTGGAGCATGACTGCGGCAGGACGGTGTTCTCTCGCGCCGCCCGCGTCTGCAAGAACGACATCGGTGGACGTTTTCTGCTGGAGGACACCTGGACCACCTTTATGAAGGCCAGGCTTAATTGCTCACGGCCGGGCGAGATTCCATTCAACTACAATGAGCTGCAGGGAACCTTTTTCCTGCCTGAGCTTGAGCTCCTCTATGGGATTTTCACCACTAATGTCAACAGCATTGCCGCATCAGCAGTGTGCGCCTTCAATTTGAGCGCTATTACCCAAGTGTTCAGTGGGCCTTTCAAGTACCAGGAGAACTCACGCTCTGCTTGGCTGCCCTACCCCAATCCCAACCCTGACTTCCAATGTGGCACTATAGATTACGGCTCTTATGTGAACTTAACGGAGAGGAATTTGCAGGACGCCCAGAAGTTCATTCTGATGCATGAGGTGGTGCAGCCTGTCGTTCCTGTGCCGTACTTCATGGAGGACAATGTGCGCTTCTCCCATGTGGCTGTGGATGTAGTGCAGGGCAAAGACATGCTCTATCACATCATTTATCTAGCAACAGATTACGGCACCATTAAGAAGGTCCTCTCCCCGCTGAACCAGACCATGGGCAGCTGTTTGCTGGATGAGATTGAGCTTTTCCCTCTGAAGAAGAGGCAGCCAATCCGCAGCCTGCTTATACTTCACAGCCGCAGTGAGCTATTTGTTGGAGTCAGAGACCAGGTCATCAAAATCCCCCTGATGCGCTGCAACTTCCACAAGTCTAGAGATGCCTGTGTGGGGGCCAGGGATCCGTACTGCGGCTGGGATCTGGTTCTCAAGAAATGCACCACCCTGGAAGAGAGCATCAGCATGAGCCAATGGGAGCAGAGCATCACACGTTGTCCTGTGAGAAACGTGACTGTGGATGGTCACTTTGGAGCCTGGTCGGGATGGAAAGCTTGTAGTCACAGCGATGGCGGCAGTATTGGTTCATGCCAGTGTCGGACTCGAGCCTGTGACAGCCCGAGCCCTCAGTGTGGAGGGCAACCGTGCCAAGGAATCAGTGTTGAGGTGGCAAACTGCTCCAGAAACGGGGCATGGACGCCATGGACGGCCTGGGCTCCTTGCAGCACCAGCTGCGGGATCGGATTCCAAGTTCGACAACGTTCCTGCAGCAACCCCACTCCCCGCCATGGAGGACGCGTTTGCGTGGGCCAGAACCGTGAAGAGAGATATTGCAACGAGCACCTGCCCTGCCCCCCTCATGTCTATTGGTCAGCGTGGTCTTCATGGGAACGCTGCACAGTTCCATGCGGCGGTGGGATCCAGTCGCGACGACGAACGTGCGAGAATGGAAATGAATGCCCTGGATGCAGCATTGTATGTTCCATTGCTACAATATTACAAGAACTAAGAGCAGAAGCATCATGGACTACCCTATGGTGTGCAAAACATCTTAATTATTTGTATCCTATATTTAAATTGCATGGTTAATACACCTGTAAGGCGAGAGTGCCGGAGCCCAATCTGCTGGAAGTAGGGAGACAGAGGATTGAGATGAGGTACTGCTCCAGCGACGGATCCACGGGATGCTCCACGGACGGAGATTTGCTGCGTTCTGGACGTATCACTGGATTGACAGTAAATGGTGGGTGGTCCACCTGGGGCCCTTGGAGCCAGTGTAGTCGAGACTGCAGCTCAGGTGTCCGAAATCGCAAACGCACCTGCTCCAACCCCAAACCCAAATATGGGGGAATCACCTGCCTCGGGCCTGCCCAGGAGTTTCAGGAGTGCAATACTACACCATGTCCAGTGGATGGGAGCTGGTCGTGCTGGTCACCTTGGTCTAAATGCTCAGTGACATGCGGCGGAGGCCACTACATGCGCACACGCACCTGTAACAACCCTCCACCTGCCTACGGAGGTGACATCTGCCTGGGTTTGCATACTGAAGAGGCCCTCTGTAACATCCAACCCTGCCCT
>TU117572
CGGTTCAGATACACCTGTAAGGCGAGAGTGCCGGAGCCCAATCTGCTGGAAGTAGGGAGACAGAGGATTGAGATGAGGTACTGCTCCAGCGACGGATCCACGGGATGCTCCACGGACGGAGATTTGCTGCGTTCTGGACGTATCACTGGATTGACAGTAAATGGTGGGTGGTCCACCTGGGGCCCTTGGAGCCAGTGTAGTCGAGACTGCAGCTCAGGTGTCCGAAATCGCAAACGCACCTGCTCCAACCCCAAACCCAAATATGGGGGAATCACCTGCCTCGGGCCTGCCCAGGAGTTTCAGGAGTGCAATACTACACCATGTCCAGTGGATGGGAGCTGGTCGTGCTGGTCACCTTGGTCTAAATGCTCAGTGACATGCGGCGGAGGCCACTACATGCGCACACGCACCTGTAACAACCCTCCACCTGCCTACGGAGGTGACATCTGCCTGGGTTTGCATACTGAAGAGGCCCTCTGTAACATCCAACCCTGCCCTG

Function

symbol description
sema5a Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Acts upstream of or within axon extension. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in CaP motoneuron and myotome. Orthologous to human SEMA5A (semaphorin 5A).

GO:

id name namespace
GO:0048675 axon extension biological_process

KEGG:

id description
K06841 SEMA5; semaphorin 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_01924489_01985310.mRNA False 2412 mRNA 0.54 15 1924489 1985310
TU117572 True 499 TUCP 0.57 3 1969252 1985311

Neighbor

gene id symbol gene type direction distance location
CI01000018_01900038_01904335 NA coding upstream 20083 1900038 ~ 1904406 (+)
CI01000018_01821013_01821973 NA coding upstream 102145 1820378 ~ 1822344 (+)
CI01000018_01815173_01819759 NA coding upstream 104472 1815173 ~ 1820017 (+)
CI01000018_01709643_01800520 NETO1, NETO1L coding upstream 123969 1709643 ~ 1800520 (+)
CI01000018_01588236_01598892 NA coding upstream 325239 1588033 ~ 1599250 (+)
CI01000018_02072273_02080049 CCT5.S, CCT5B, TCPE, CCT5 coding downstream 86923 2072233 ~ 2080153 (+)
CI01000018_02104142_02113293 EIF2S3L, EIF2S3.S, IF2G, EIF2S3Y, EIF2S3X, EIF2S3 coding downstream 118393 2103703 ~ 2113546 (+)
CI01000018_02115961_02124173 ZFX coding downstream 130651 2115961 ~ 2124841 (+)
CI01000018_02150486_02181595 PIP4K2AA, PIP4K2AB, PIP4K2A coding downstream 165176 2150486 ~ 2181619 (+)
CI01000018_02203236_02203803 NA coding downstream 216963 2202273 ~ 2204218 (+)
G103375 NA non-coding upstream 37039 1887186 ~ 1887450 (+)
G103330 NA non-coding upstream 236740 1687452 ~ 1687749 (+)
G103329 NA non-coding upstream 237567 1686537 ~ 1686922 (+)
G103323 NA non-coding upstream 247794 1676417 ~ 1676695 (+)
G103308 NA non-coding upstream 273562 1650625 ~ 1650927 (+)
G103347 NA non-coding downstream 97796 2083106 ~ 2083310 (+)
G103363 NA non-coding downstream 148865 2134175 ~ 2136567 (+)
G103457 NA non-coding downstream 320530 2305840 ~ 2306113 (+)
G103478 NA non-coding downstream 392612 2377922 ~ 2378138 (+)
G103479 NA non-coding downstream 392944 2378254 ~ 2378470 (+)
G102895 NA other upstream 338827 1582913 ~ 1585662 (+)
G104258 NA other downstream 1705779 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 2384876 4368179 ~ 4375866 (+)
G104670 NA other downstream 2770491 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 3231370 5216452 ~ 5222616 (+)
G106429 NA other downstream 4896301 6881611 ~ 6886325 (+)
G103386 NA non-coding upstream 9266 1959700 ~ 1959986 (+)
G103385 NA non-coding upstream 10733 1958263 ~ 1958519 (+)
G103384 NA non-coding upstream 11234 1957789 ~ 1958018 (+)
G103383 NA non-coding upstream 11723 1957029 ~ 1957529 (+)
G103382 NA non-coding upstream 12338 1956598 ~ 1956914 (+)

Expression


Co-expression Network