CI01000018_02150486_02181595 (PIP4K2AA, PIP4K2AB, PIP4K2A)


Basic Information

Item Value
gene id CI01000018_02150486_02181595
gene name PIP4K2AA, PIP4K2AB, PIP4K2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 2150486 ~ 2181619 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_02150486_02181595.mRNA
ATGGCCTCGGTTGGTAACACTGTCTCATCGTTTGCGAGCAAAACTAAAACGAAGAAGAAACACTTCGTGGCTCAGAAAGTGAAGCTGTTTCGTGCCAGCGACCCTCTGCTCAGTGTTCTCATGTGGGGAATAAACCATTCGATAAATGAGTTGAGCCATGTTCAGATCCCCATCATGCTTATGCCTGATGACTTCAAAGCCTACTCTAAGATTAAAGTGGACAACCACCTTTTCAACAAAGAGAATATGCCAAGCCATTTTAAGTTCAAGGAGTATTGCCCTCTTGTTTTTCGTAATTTGAGAGAGAGGTTCAGCATCGATGACCAGGACTTCCAGAACTCTTTGACCCGTAGCGCGCCCCTCGTCAGTGAAGCTCAGGGTCGTAGTGGTGCTCGCTTCCACACCTCCTACGACAAGAGGTACGTCATCAAGACCATAAGCAGCGAGGACGTGGCTGAGATGCACAACATCCTCAAGAAGTACCACCAGTATATTGTGGAATGTCATGGTACCACACTGCTGCCACAGTTCCTAGGCATGTACCGCCTCACTGTAGACGGAGACGAGACTTATATGATAGTCACACGCAACGTGTTCAGCCACCGGTTGTCTGTGTATAAGAAATATGACCTGAAGGGATCTACCGTTGCCAGAGAGGCAAGTGACAAAGAAAAGGCTAAAGAACTCCCTACGTACAAAGACAATGACTTCATCAACGATGGACAGAAAATATACATTGATGAGGAGAGTAAGAAAACCTTCCTCGATAAGCTTCGAAAGGATGTGGAGATTCTCCCAGAAAGGAGGTGTATTTTATGGCTGTTATTGACATCCTGCAGCATTATGATGCCAAGAAAAAGGCTGCTCACGCAGCCAAGACGGTAAAGCATGGGGTGAGTGCTTTCAAAA

Function

symbol description
pip4k2aa Enables 1-phosphatidylinositol-4-phosphate 5-kinase activity. Acts upstream of or within regulation of muscle organ development. Is expressed in brain; central nervous system; eye; pectoral fin; and somite. Orthologous to human PIP4K2A (phosphatidylinositol-5-phosphate 4-kinase type 2 alpha).
pip4k2ab Predicted to enable ATP binding activity and phosphatidylinositol phosphate kinase activity. Predicted to act upstream of or within phosphatidylinositol metabolic process and phosphorylation. Orthologous to human PIP4K2A (phosphatidylinositol-5-phosphate 4-kinase type 2 alpha).
pip4k2a Enables 1-phosphatidylinositol-4-phosphate 5-kinase activity; 1-phosphatidylinositol-5-phosphate 4-kinase activity; and protein homodimerization activity. Involved in several processes, including 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process; negative regulation of 1-phosphatidylinositol-4-phosphate 5-kinase activity; and positive regulation of autophagosome assembly. Located in autophagosome; cytosol; and plasma membrane.

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG:

id description
K00920 PIP4K2; 1-phosphatidylinositol-5-phosphate 4-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_02150486_02181595.mRNA True 909 mRNA 0.46 8 2150486 2181619

Neighbor

gene id symbol gene type direction distance location
CI01000018_02115961_02124173 ZFX coding upstream 25645 2115961 ~ 2124841 (+)
CI01000018_02104142_02113293 EIF2S3L, EIF2S3.S, IF2G, EIF2S3Y, EIF2S3X, EIF2S3 coding upstream 36940 2103703 ~ 2113546 (+)
CI01000018_02072273_02080049 CCT5.S, CCT5B, TCPE, CCT5 coding upstream 70333 2072233 ~ 2080153 (+)
CI01000018_01924489_01985310 SEMA5A coding upstream 165176 1924489 ~ 1985311 (+)
CI01000018_01900038_01904335 NA coding upstream 246080 1900038 ~ 1904406 (+)
CI01000018_02203236_02203803 NA coding downstream 20654 2202273 ~ 2204218 (+)
CI01000018_02205930_02256958 MLLT10 coding downstream 23593 2205212 ~ 2256958 (+)
CI01000018_02260011_02260307 NA coding downstream 78283 2259902 ~ 2260862 (+)
CI01000018_02287327_02289682 NA coding downstream 104508 2286127 ~ 2289716 (+)
CI01000018_02293913_02296864 BMI1, BMI1A coding downstream 112171 2293790 ~ 2297763 (+)
G103363 NA non-coding upstream 13919 2134175 ~ 2136567 (+)
G103347 NA non-coding upstream 67176 2083106 ~ 2083310 (+)
G103386 NA non-coding upstream 190500 1959700 ~ 1959986 (+)
G103385 NA non-coding upstream 191967 1958263 ~ 1958519 (+)
G103384 NA non-coding upstream 192468 1957789 ~ 1958018 (+)
G103457 NA non-coding downstream 124221 2305840 ~ 2306113 (+)
G103478 NA non-coding downstream 196303 2377922 ~ 2378138 (+)
G103479 NA non-coding downstream 196635 2378254 ~ 2378470 (+)
G103480 NA non-coding downstream 197958 2379577 ~ 2379869 (+)
G103482 NA non-coding downstream 202486 2384105 ~ 2384329 (+)
G102895 NA other upstream 564824 1582913 ~ 1585662 (+)
G104258 NA other downstream 1509470 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 2188567 4368179 ~ 4375866 (+)
G104670 NA other downstream 2574182 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 3035061 5216452 ~ 5222616 (+)
G106429 NA other downstream 4699992 6881611 ~ 6886325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022868 pip4k2aa coding NC_007135.7 CM002908.2 17068724 ~ 17127833 (+)