G106429


Basic Information

Item Value
gene id G106429
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6881611 ~ 6886325 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU120967
CCACTGAAACAAAAATTACACCCAGGAGGAAAAGGCAAGCAATATTATTTTACTCCTCCTTCTCACAGCAAAAGAGGTTCATTCAGCACACTTATTAAACAACATACATAATGTTAGTAATCAAGCCCACATAAAAAGACTAAATGGAGGGTAATTTATATTCATGCTTTGTATTGCTGTCAAGAATAGCTTTTATGATATGTGCTTCAGCTATTATTCATAACCTAGCGGTAGTGTAGAGAGGTCATGAAAAGCGCCTGTTTTCTTCTCTGTAGGTGAAGGGGTCTCCCTGGAAGGGCAGCACTGGTGGCTGGTTGTAGTTGGCCATCATGAAGATGAAGATGGTTCCTAACGTCATAACTGGAGTGACCACAAAGAAGCAGAGTCGGTCCACTGTCCTGGCAATCCCACTCCAGTTGTCCTTTTCCTGAAGTAGAAATGGCTGGCTTCATCTCGTTGTACAGCTGTTCCGACACCTCAGAGTCATTACCGGATGTGTATGTGGCTTTGGGAGTGGGGCGAGCAGCCATGCCATGCCTCTCTGACTGCTTCTCAAACATCAGTTCGCTGCGTGATTTAACGCTGTAGTACTCCTCGGCCTGGGCAATGTATCCCAGTGAGCTGGAGCGCCGCGGCAGCGCCCCCTCCAGGCTGGGTTTGTCATCGACCGGACGGGACATGTACAGAAGACGAGGAAGACGCTCCAAAAAGAACTCTTTGGTCCATTTTGTCATGACATGGGTGCTAGGGGTCCGAAAATGCAGGTTCAGCACAATGACGCAATTCAGCACCACCACAGTGACCAGTACCATGATAAACATCAGATACTTGACGATTAAGGGAACCGCCATAGACGTCTCAGGCAGACGCTGTGAAATCAGCAGCAGAAACACAGACTGAGCCAGCAGCACAGAGATGGATAACGTCATCTTCTCACCACTGTCTGCAGGCAGGTAGTAGACGAGAGAGGCCAGGAAAGAGATGAGCACACAGGGAATGATTATATTCACAATGTAGAACAGCGGTTTGCGTTTAATGATGAGGTAAAAGGTGATATCCTGGTGCTTGTTGCTTTCCATTGGGATGTTTTTATAAATGTTTTTCCTGGCAGGCATATGAACAATTTCCCATTCGCCATTTTCTGTGAATCCCTCAGGATCAATAATGATCCATTCCACTTTGTAGGACTTTCCATTTTCCTCCTCCTCTTTGAGATTTAAGCTAATCTCTTTGGCGTTGTAAGTTAATGAGCTGAACTTCAGAGAGCAGTTCTGCCAATCGAAAGGGAAGTAGTTGACGTTTATAGAGCAGGAGCTCCGAAATATAGCTGGAGGTAACCAGTACACGTATCCACTGGGATAGATCAACACGTTGCAGTAATAGGCCACCTGGAACTGGGCGTCATTGTTGTTTTCAAGGACAATCTCTGGTAACCACACCATACTTGGAGGTAGACGCAGTACAGGAATGTTATCATACTCTGATTCATTCCACACAAGTCTATAATCAGTCCAGCCATGCTCCATCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU120967 True 1528 TUCP 0.46 10 6881611 6886325

Neighbor

gene id symbol gene type direction distance location
CI01000018_06780816_06782576 KLHL34 coding upstream 97798 6779399 ~ 6783813 (+)
CI01000018_06774816_06776610 SMPX coding upstream 104562 6772087 ~ 6777049 (+)
CI01000018_06654341_06664818 GABRR3A, GABRR3 coding upstream 216705 6654341 ~ 6664906 (+)
CI01000018_06624871_06636641 KIAA1524 coding upstream 244637 6624871 ~ 6636974 (+)
CI01000018_06609697_06619473 NA coding upstream 261640 6609325 ~ 6619971 (+)
CI01000018_06968918_07004161 SH3KBP1 coding downstream 82593 6968918 ~ 7004379 (+)
CI01000018_07011537_07045271 MAP3K15, MAP3K5 coding downstream 124636 7010961 ~ 7045271 (+)
CI01000018_07062582_07063654 NA coding downstream 176133 7062458 ~ 7064264 (+)
G106403 NA non-coding upstream 61841 6803075 ~ 6819770 (+)
G106338 NA non-coding upstream 122727 6756440 ~ 6758884 (+)
G106387 NA non-coding upstream 139793 6739229 ~ 6741818 (+)
G106385 NA non-coding upstream 145035 6733032 ~ 6736576 (+)
G106445 NA non-coding downstream 4096 6890421 ~ 6892782 (+)
G106467 NA non-coding downstream 48546 6934871 ~ 6935093 (+)
G106687 NA non-coding downstream 179729 7066054 ~ 7066343 (+)
CI01000018_05217404_05218896 NA other upstream 1658995 5216452 ~ 5222616 (+)
G104670 NA other upstream 2121843 4755801 ~ 4759768 (+)
CI01000018_04368179_04375192 NA other upstream 2508199 4368179 ~ 4375866 (+)
G104258 NA other upstream 3190092 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 4896300 1924489 ~ 1985311 (+)

Expression


Co-expression Network