CI01000018_06774816_06776610 (SMPX)


Basic Information

Item Value
gene id CI01000018_06774816_06776610
gene name SMPX
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6772087 ~ 6777049 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_06774816_06776610.mRNA
CTCATTTCCATACAGGCACTTTGCTCTTTATGAAATACAAACTCCAGCAGGAAGACACGTCCAGCAGGTTTTGTGGAAAGGTTTGGTTTCGACAACTACACTCGACCACTGCACAATATTACATGACCTTAAATGACTTTAGTACTGTAGTGTGGTTACAGGAGCAAATGAGCAGTGTCAGGGGTGTGAAGGCCAACCTTAATATTCCAATGGGGGCTCTGCGTCCTGGGGCGGGACATCCTGTGAAGAGGAGAGAAGATACAGTAGACACAGAGGAGGCATCTCCGGTCACTCCAGAGGAGAAAAAGCCCCTGCCTGGTGCTGTGAAACTACCGGGCCCTGCCGTCAACCTCTCCGAGATCCAGAACGTAAAAAGTGAACTCAGATGGGTCACCAAGGACTAAACAACACAGGTAAATCTGACAGTCAAATATACACACTCACACCCATTTCTCCCTGTCTACCAATTTTGGTTAGTCAAACATTGCTGGTGGTTCTCAATCTTATGTACACACACACAAACAAATATATATAAAGCATTTGGTTTTCTAAATGCGCCACATCACTGAAATCATTTAGAAAGGCCCCATGCTGTTAACACAAATGACCACATGGGGTCAGTAGCTGTAAAAGTAGTTTGCACGTGTGTTAGCATGCATATGTCAGTGCTGGAGTGTGTGAGTAGCTGTGTAATGGGGTATGAGGGTGAATCAGGCTCTATTAATACCCCACAGATCAGTGGGGCAGTTAAAGTCCGTCTGTTGTGTGCAGTCCCAGCATGCCTCACAAGTCCTTCCTATTATAGCGCAAAACATGTGCTGTGACCCACTCTGTGTGACAGAA

Function

symbol description
smpx Predicted to be active in M band; costamere; and muscle tendon junction. Is expressed in several structures, including Kupffer's vesicle; electrically responsive cell; extraocular musculature; inner ear; and pericardial region. Human ortholog(s) of this gene implicated in X-linked deafness 4. Orthologous to human SMPX (small muscle protein X-linked).

GO:

id name namespace
GO:0006941 striated muscle contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_06774816_06776610.mRNA False 843 mRNA 0.46 3 6774816 6777049

Neighbor

gene id symbol gene type direction distance location
CI01000018_06654341_06664818 GABRR3A, GABRR3 coding upstream 109910 6654341 ~ 6664906 (+)
CI01000018_06624871_06636641 KIAA1524 coding upstream 137842 6624871 ~ 6636974 (+)
CI01000018_06609697_06619473 NA coding upstream 154845 6609325 ~ 6619971 (+)
CI01000018_06530603_06532567 AMER2 coding upstream 241741 6529471 ~ 6533075 (+)
CI01000018_06516545_06524220 NA coding upstream 249412 6516545 ~ 6525404 (+)
CI01000018_06780816_06782576 KLHL34 coding downstream 2350 6779399 ~ 6783813 (+)
CI01000018_06968918_07004161 SH3KBP1 coding downstream 191869 6968918 ~ 7004379 (+)
CI01000018_07011537_07045271 MAP3K15, MAP3K5 coding downstream 233912 7010961 ~ 7045271 (+)
CI01000018_07062582_07063654 NA coding downstream 285409 7062458 ~ 7064264 (+)
G106338 NA non-coding upstream 15932 6756440 ~ 6758884 (+)
G106387 NA non-coding upstream 32998 6739229 ~ 6741818 (+)
G106385 NA non-coding upstream 38240 6733032 ~ 6736576 (+)
G106383 NA non-coding upstream 42275 6732271 ~ 6732541 (+)
G106380 NA non-coding upstream 46628 6727912 ~ 6728188 (+)
G106403 NA non-coding downstream 26026 6803075 ~ 6819770 (+)
G106445 NA non-coding downstream 113372 6890421 ~ 6892782 (+)
G106467 NA non-coding downstream 157822 6934871 ~ 6935093 (+)
G106687 NA non-coding downstream 289005 7066054 ~ 7066343 (+)
CI01000018_05217404_05218896 NA other upstream 1552200 5216452 ~ 5222616 (+)
G104670 NA other upstream 2015048 4755801 ~ 4759768 (+)
CI01000018_04368179_04375192 NA other upstream 2401404 4368179 ~ 4375866 (+)
G104258 NA other upstream 3083297 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 4789505 1924489 ~ 1985311 (+)
G106429 NA other downstream 104562 6881611 ~ 6886325 (+)

Expression


Co-expression Network